RNA id: XM_021612672.2


Basic Information

Item Value
RNA id XM_021612672.2
length 1681
RNA type mRNA
GC content 0.42
exon number 10
gene id LOC110529973
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 47051073 ~ 47067973 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGGAGGACTTCGATAGTTATAACCAGTGGAAGGTAAGATTCTGAAACCAGGTGCTGTGCCGAGCGTGAATGTGAAGCCTGCAACCTCTATTTCCTACCGACCTACCGGTACATCATGAGTTTCAGCAGTGATGGAGATGAACTGGGTAAATTCAATGTGGATTTACATCACTATATCGATATTGGATTAGCTGATATTGGATTAGCTGACTCTCCTTCGGCCGGTGAAACTGCCTCTCCCTCTGAAGGCCAATCCTTGGCTCTTCTTTAACTTTGGTAGCTAACTTAGATGTCTATCGGATTTTACAATTTTAGGACAATGCACAGAACAACAAAAATCAAGATTACTGAGCTGAATCCACATTTGATGTGTGTCTTGTGCGGTGGATATTTTATCGACGCAACCACCATTGTGGAGTGTTTACACTCATTCTGTAAAATGTGCATTGTTTGTTATCTGGAGACCAGCAAATTCTGTCCAATTTGTGATGTCCAGATTCACAAAACGAAACCCCTTTTGAATATTAGgtcTGACAAGACCCTTCAAGACATTGTTTACAGGTTGGTACCTGGGCTTTTCAAAGATGAAATGAAACGAAGGAGGGATTTCTATGTTGCACATCCTTCTCTTGATGctggaaatggaTCAAATGAAGAGCGAGGGGAGGTGGCAGATGAAGAAAAGAGAATAATAGCCGACAATGAGATTATAAGCCTGTCCATTGAATTTTTTCATCAGAGCAAGCTGGGAAATGAGGATGGTGAAGTCAAGGATACGAAGACAGAGATGATTGACAAGCGATACTTGCAATGTCCAGCAGCCATGACCATAATGCATCTGAGGAAATTCCTTCGAAGTAAAATGGATATTCCATGCACCTATCAGATAGAAGTTATGTATGAAGATGAACCATTGACGGATTACTACACATTAATGGACATTGCACACATCTACACCTGGAGAAGGAATGGTCCCTTGCCATTGAAATACCGGGTACGAACAGGCTGCAAGAAGATGAAGATGAGCAGCCCAAGAAACGGGGCCAAAACCACACAACATGCTGGAGGAGTATGCTATGACTCTGGGACTGGGGGTGACAAGCATCTGAACAATGACCCCGAAGCTccctccacctcatcctcctctctgcccaGTCCGAGCCACAGAATTGTccactcatcatcatcatcgcttACCCACTTCCCCCACCTCTCCAGCATTGGCACCTCAACAAACGGTATCTTAACAAAAGCGGGTCCAAATCAACTTTCCCGGACATTCACGCCAACATAGACTGTAGATACTTTTATTATTGTTTCAAACATTTGCCGTTTTTATATAATCCTATGTGGACAATATATTTGTTCATTTGTCTAAGAAAGACTGTGGAAAGACTTATTGAATTTGCTCAATGGCATCTGCAGATCGGATTTGAAATGGCTAGCCTAGTAATGTGCCATGTGGTTTGGAATGTGAAAAAAATATCACGTTTACTTCAAACCTGGACATTCCAATGATTCCTATAACTGAATTGCCAAATACTGTAGTTGATGGAAATGGAAATGTGGTTTTGGCTTCGTCAACTTCATTTGTCAACACACAACAATAGTTGACAAAAATAGTTGACTATTGCCCTCTGCATACATGTAATGGGGAATTTAATAAACACAACCTGATTGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU811892 lncRNA downstream 5577 47044762 ~ 47045496 (-) True G714279
TU811893 lncRNA downstream 5718 47044704 ~ 47045355 (-) False G714279
TU811886 lncRNA downstream 14756 47036027 ~ 47036317 (-) True G714276
TU811880 lncRNA downstream 35262 47015599 ~ 47015811 (-) True G714271
TU811871 lncRNA downstream 40804 47003967 ~ 47010269 (-) True G714262
TU811904 lncRNA upstream 1603 47069576 ~ 47069788 (-) True G714290
TU811910 lncRNA upstream 7887 47075860 ~ 47076089 (-) True G714296
TU811912 lncRNA upstream 9788 47077761 ~ 47077967 (-) True G714298
TU811914 lncRNA upstream 11125 47079098 ~ 47079448 (-) True G714300
TU811932 lncRNA upstream 21542 47089515 ~ 47089752 (-) True G714318
XM_021612670.2 mRNA downstream 15711 47027194 ~ 47035362 (-) True dnajc1
XM_021612671.2 mRNA downstream 23998 47015885 ~ 47027075 (-) False nebl
XR_002474465.2 mRNA downstream 23998 47017536 ~ 47027075 (-) True nebl
XM_036985505.1 mRNA downstream 247904 46651828 ~ 46803169 (-) True pex5lb
XM_036985508.1 mRNA downstream 247905 46651828 ~ 46803168 (-) False pex5lb
XM_021612689.2 mRNA upstream 162114 47230087 ~ 47260839 (-) False LOC110529976
XM_021612686.2 mRNA upstream 162114 47230087 ~ 47260840 (-) False LOC110529976
XM_021612688.2 mRNA upstream 162114 47230087 ~ 47260840 (-) False LOC110529976
XM_021612685.2 mRNA upstream 162114 47230087 ~ 47260844 (-) False LOC110529976
XM_021612687.2 mRNA upstream 162114 47230087 ~ 47260844 (-) False LOC110529976
TU811283 other downstream 725392 46311130 ~ 46325681 (-) True crfb16
TU810338 other downstream 1592825 45457777 ~ 45458248 (-) True G712814
TU808567 other downstream 2511569 44538793 ~ 44539504 (-) True G711133
TU806781 other downstream 3879991 43170760 ~ 43171082 (-) True G709454
TU806574 other downstream 4330374 42719771 ~ 42720699 (-) True G709272
TU812043 other upstream 110451 47178424 ~ 47178736 (-) True G714425
TU813564 other upstream 1220969 48288942 ~ 48289581 (-) True G715865
TU813956 other upstream 1474318 48542291 ~ 48616523 (-) True dlg1l
TU814203 other upstream 1691939 48759912 ~ 48761163 (-) True G716463
TU814220 other upstream 1714148 48782121 ~ 48782515 (-) True G716480

Expression Profile