RNA id: XM_021612687.2


Basic Information

Item Value
RNA id XM_021612687.2
length 6806
RNA type mRNA
GC content 0.50
exon number 12
gene id LOC110529976
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 47230087 ~ 47260852 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAGAAGGCCAAAAAGTTGCATgctgggaagatgggcgacactgAGGATGCTAACGTCGTTAGTAACGTGGACTGAGAGGACGGGTAACCAAGTCGTTCTTGCGGCAAATGACATCAATTGTGTTTCCAAGTGTAGATTCGTCCAAGCTACCAGGGTAAAGTCTCCTTCGAACACCACCACCCATCTGGATATCCCTCTCCTGCGTTTACATCATGTGTAGTGTGCAGTGCCCCAGCGGTGGACTAGCCCGTGTACTATGCTGTGGCTGCACTCTGGCCCGGGCCTGCTGAGCTGCGGCAGCATCATCATCCCCTCGCCCCTCTGCCCACGACACGCCTGCCGCACTAGTGTCCTTGCTCTCGCCGGCATGTACGCTACCCGCCTGTACAGCTCAGGAGGGGGAAAGCCAGGGCACTGGCCGGGCCTGGGGGATAGAGGGCTGCCCATGCTGGAgaaccaccacccccaccacgtGCACACTCCAACCCCCAGCTACCCGCCCCTCTACCAGGGGCGCCCTGACCCTCACCGGGGGCCCCACTTCCACAGTCACCACCACCAGCAGCACTACCACCCGCACCTGGCCCCACCTCCTCCgcctccccccatccccctgtACGCCCACCTGCACCACCACGCTACTGTTGGCGCCGCTGGCAACAAGAAGAAGACGTGGAACTTCATCCACGAGAAGATAAGCTACGACACCTTCTTCACCATGAAGAGGCTGATAGAGCGCTCGCGTCGGGGCGACGAGGTGCTGCGCTGGGTGACGCAGAACCCGGGCAAGATCTCGCACAACCACTACCCCATCGCCCTGCAGAAGATCGGCCAGCTACTACAGGCCGGGGCTGCAGGAGGGGGCGGTGGTGACTCGGAGGCAGCCCTGGTTCCCAGAGCCGGTGGAGGAGCTGAGAACGAAGGCAGACAGATCCTGGAGCACCAGGACTTCCAGACACTGTGCAACGCCATCGTGAGCGACTGTGTCAAGTTTGACAACTTCAGCATCGTCAACTGCCTGTACGCTGTGGCTGCACTAGGCCTTCCCAGCGACTCGCAGGTGGTGCAGGTGCTGGAGGCAGAGTCACAGTCGCGGCTGGACCAGTTCAACCAGAAGGATGTCTCCATGGTGTTCAGCTCCAGCATGAAGCTGCACCCCAGCAGCCAGCACCCCCTGACCGAGGCCTGCCTCGCAGGCTTGGAGAAGAACCTGGAGCGGGAGCGCCACCCGCAGACCCTCTTTCTGCTACTCTCCTACTACCGGCTCAAGTGGCACTCGCTGCAACCCACCGACACTACGACGGCCGGGAACGTCTCCAATGTACGCCCCAACCCAGAGCAGCTTCTGGCCAACAGGAAGATCCTGCGACTGGTCAAACACACACTGGCTAGCGTAAGTGGTGTGCGCGACCAGGAGATGGCTCTGCTGGATGAGATGCTGGCTGTGTGTGCACGTGAAGCTAGCAACAAGAGCCTAGAGCTCATCTTCAGCTCGCACCTCTTCTACCAGAACAGGCAGGAGAGGTTTGTGTGCAGCCTGGCTGAGCAACTGCCTGAAAAAGTGGACAGCATAACCCCATTCACCATGGCCCTCATTGCCAAATACATTGCCCGCCACCGGCTCAGAGAGGTTCGACTTCTTGACACCATCGCTGATTTTCTGGTCAAAAAGGGCGAATACCTGGACAGCAAGGTTATCCAGAAGCTGGTGTTCCCCTTCAGCCGGATGAACTACCTGCCGTCCAACAAGGTCCAGTTCTTCTCCATGCTGGAGGTGGTGCTGGAGCTTAAGGCCCTGAGCTCCCCGTTAGCCACCGTCAATATCCTTATGTCCCTGTTCCAGCTGGGCCACTTTCCCGGCCTGGTGCTGCACAGGGTCTTCTCCACTGCCTTCATCAGCAACGTCACCAACAGTCCTTATGCTCTGATCGTGCTTCGCTACTTGTCTCTGTTGGACGCAGCGGTTGAACTGGAGTACCAGGACTACACCGGTCCACGGCTCCAGGACACGCACAAGGTGCTCATGTTTGACCATGCGCTGACCGCTGATGAGGTCAACCGCAAATACAGcTACAAGGGTCTTGTAGCTGAAGCCCTCAGACAATTGGTTGGAGAGCATGGCTACAAGCAAGATGAAGTCCTGGCCCCTGGGTATTACACAGACTTCCTGCTGTGGATTGATGGCTCTGGCCGAGTTCTCCCTATCCGGACAGGGGCAGGGACCTCCCTAGGTATGGCCCCCAAAACCCCAGAAGGATCCGCAGCCGTGACAGCCCTCACTTCAGACTTTCAAAAGTTCTCCCCCTTCGCCCCACTAGAGGTAGGGAGGGACCAGCGACCCGTCGAGGGGGACGATGCGGTGAACTTTCTGCCCTACCACATGCAGCGAGGGGCAAACCCTTCCTCGGCCCAGAGGACGGGCCCTAACGGCGGGGGCCCTCTGGACTACAACCCTTACTACACGTCGGCCGATTACTACTACAGCCTGGCCAAGGAGCACTCTTTGGAGAGCCAAGACAGCTCCACGCTCAGCAGCCCTCCCTCAGACAGCCTGGCACATCCAGGGGCCTCCGGGGTAGGGGGATCTGCCACGGCTGCCCCCAATTCCCTCTTCCAATTCTCCATTGGAAAAATCCTGGAGGACGAGGGAGGGGTGCAGGTGGGGCCGGCGAGTCAGGGGCTCAATTGCGAGCTTCCTGCATTCTATGAGGCAAACGGGGAGGTGAAGCCCACCTCACCACTTCAACTGCACCCGGCTGATCGAGCTGGGGACCAGCGGCAGCTCAAGAGAGTGGTTATGTCGGTGAATGACAAGTGGCACTACTGTCACAACTCTGAGGTGCTGGTGGGCTCCCGGGCCATGAGAGACCGTCACCTGCTGCTCCTGGGATACGTCATTCTGCAGCTGCCCTATCATGAACTGGAGAAGCTGAATGGTATAGAGGAGGTGAAGCAGTACCTTCACAAAAAGCTCCTGGAGGTCCCCTTATGACAACAAAagacttgtgtgtttgtgtgcgcgagTGTATGCCATTTTGGCGGCTTGGAATAGGACGGTTATTGGTGGGATTGCGAAAGGGGGCTTTGTTTGAGGTGGTAGACAAACCCTGGTCAAAGTCTAAAACGGAAGAGTTTCTGGCAACTTGCATTTATCAAAATAGCGCCAGCCTATTTGCAACCAGTCACGTCCCCAGTTGATGGCATGTGTAGTGTCAGGTTGCCACGCTTGTTGTCAATGCAATCTTGTCATTGTCACTTCACAACggttcaaatctaattttattggtcacgtacacataatTTGCTAATGTTATCGCAAGTGTAGCAAAATACTTGTGCATAGCTTCAACAGTACAGTAATGcctaaaaatacaaaaacagtaCACGCAAATCTAAAAGAAAGGAATTAAGAACGAAATAAAtattagaacgagcaatgtcagtcCGAAACCCCCCAAAATAcaccatatatacaaaagtatgtggacacaatGCGTGGATTTGGCTATCTCAGCCCCACCTGTTGCTGaaaggtgtatacaatcgagcacacagtcatgcaatctccatagacgaacattgacagtagaatggccttagtgAAGGGCTCAGtgactttccaacaagtcagttcgtcaaatttctgccctgctaaagctgacccagtcaactgtaagtgctgttattgtgaagtggaaacgtctaggagcaacaatggttcAGCCGCAAattggtaggtcacacaagctgaTAGAATGGGACCGTTGAAGAGCGTAGCGCGttaaaatcatctgtccttggtttcaacactcactacgagttccaaactgcctctggtaaCAACGtctgcacaagaactgttcatcgggtgcttaatgaaatgggtttccatggccgagcagccacacacaagcctaagatcaccacgcgcaatgccaagcgtcggctggagtggtgaaaAGTTTCCTGCCATTGGACTTTGGAGTAGGGGAaatcgttctctggagtgatgaatcacgcttcaccaactggcagtctgacagacgaatctgagtttggcggataccaggagaatGTTACCTACCCCAaaacatagtgccaactgtaaagtttggtggaggaggaataatggtctggggaggtttttcatagttcgggctaggccccttagttccggtGGAGGGAAATGTTAATGCTGAAGCATATGACGACATtcaagacgattctgtgcttccaattgtgtggcaacagtttggggaaggcccttccctATTTtgacaatgccctcgtgcacaaagcaaggttcatacagaaatggtttgctgagatcggtgtggaagaatttgactggcctatGCAGAGCCCTTACCTCAACCTcatcgaatacctttgggatgaattggaacgctgactgcaagccaggcctaatcgcccaacatcagtgtccaggggggaccaactccatattaatgcccatgattttggaatgcaATGTTTAACAGGCAgctgtccatatacttttggtcatgtagtgtagaagctgtttttcagtccctcggtcccagctttgatgcacctgtactgtctccgccttttagatggtagcggggtaaacaggccgtggcttgggtggctgaggtcctgtGACACTGgttgctgtagatgtcctggagggcaggcagtgtgcccacGGTGTTGCGTGGGCTCACAGCACCACCCTCAGGAAAGCCTTGTGGGTGcggacggtgcagttgccgtaccaggcggtgatacagcccgacaggatgctctcaatggtaacATCTGTTGAAGTTAGTAGttgtcttaggggccaagccaaatttcttcagcctcctgaggttgaagaggcgctgttgatCTACGGACTATTTCTAATATATCACAATAGCGTGACAAAATATTTGTTTTCATTTTAGGTTTTGACCAGCGTATTTCTATAGTTCTAGTTTTGATCATGGTTTGGTGTGGACGAGTGGGAAGtaagttgttgttgttattattattataattattattataatagtcATACGGAGATGACAATGTTCTGGTGGTGTATGAAAAAAGAAGTccctttttaaaataaaaaaattaatgtTTTATTGAACTGCAGTTGTAAAGCATGTTGGGACTGTGTAATAGGTTCGCTACGGACGTCAGAACCGCAACTGTTCATTCGGATCAAATGTAACTGGGTGACATGGGGTTTATTGAGACTAACAAATGGGACCTCTTCATTGTGTTTTCTAATACTTGTGTGCAACGTATGGTCTGTAAATGAGGGATGAGGATGGATAAATGAAGTTAatgaaaaaaaaagtgttatatatTTTTGTCTTCACTAGAATGGCTTTTCCATTGTCCAGAACTAAGCAATGCACGTTGGAGCATCTATTTTCTACCTGGtctctttgttttgtctttggtaCACTTTACTTACGACATTCAATGAATGACTTCATTCAGAGAGGACTTTGTGATTCCTTAAGTGAGTTTCCACCATTGCATTGACAATGGGGAATTGCCAGACACCAGTCTAGTTAAATTAGGTGTATTGCTATGAAATAGACAAGTGAATACAGTTAATCTGAGAACCTTTTTGTTTTCTCAGTGGCATTTGAAATAGAACCCTGACCTAGGTTTTGCATGATTGAGGTAATGCGTTAAGTCATGCAGTGGTTTGCATGGACAAATTGGTGTTTGATACTGGACTTGCTGAAAATTAACCATTTTTATTTCAAGTTGTCTCAAAGCGATACAAATATTGTTAGAGACAGTCCATTACCTTTTTACAGGACCCCAAAGACTTGGACTTTGTTAGGTAGGCAGAAATGGCTCATGGGATTTGTAATTGTGGTTTCGCCCCTGTATTACTAGGTGTTTTGTCTTTGCTCTGTTTATGTAGCCGATCAGGAAGAGAATAGGGTAATGCCAAGGATTTATATTTACACTAGATGACTGAGGGCACTGTGATGAAGtcaccgtgcctccatcttgacACTCCCCAGGCAAAGCTAAAGGCAATTGttttaaggtcataccaaggataattttactataagaccccttgaagtatgaAAAAATAGTAAATTATTTGATAGAAGAAAGAAATGGGGCCTTACTACTTTTAGCCCATGCAAACGCATTGTATAACATTCACTACATGAAACAGCTAGCCCCcaccaacaaaaaaaatctaaagttagtttgttctgaagtgtctgtccctTATGTGAAAGATCAGGatttttgtttttaaaaatgtttacatgtATCTAACCCCTTTCTTTTTTGGCACTATACATTTGTTCAACTGTTACCAGGGGCCCTTCAGACAAAAACAACcgacgtgtttgtgagagtcatCATAATAGAATGTAGGCCAAACTGTTCGGATGCCACAGACAATTGTGTGAGAAGATGGATTTTCAGGTTGTcttatggtctgacaaacacggcgctagctctgtctttcaccgcagatgtggaagtgtgACATAGGTGGATTGAGATACACCCAATGCATAAATAACGGGGATGTTTTTATGTTGTGGACACCGACCTTACAGGGTTTGTATTAATGAATGCATTTGTAAGGATCCATGGGCTGTTTTGAATGCTTGTTGCAAGTCTACAAAACACTGTAAATGCATTATGCACAGGTGGTTGAGTGTTTATTTATTGGTATCACTCCTGGTACAGGGGACGTGTGTATTATATCTGGGGAAAGACAAGTTTGGAGATTGTTTAAATATTGATATGTCTGTATAAAAACAAAAGCAacatgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU812331 lncRNA downstream 794 47228767 ~ 47229293 (-) True G714689
TU812058 lncRNA downstream 21742 47207979 ~ 47208345 (-) True G714440
TU812053 lncRNA downstream 27206 47202652 ~ 47202881 (-) True G714435
TU812048 lncRNA downstream 31743 47197656 ~ 47198344 (-) True G714430
TU812047 lncRNA downstream 33559 47193357 ~ 47196528 (-) True G714429
TU812411 lncRNA upstream 91349 47352193 ~ 47388487 (-) True G714764
TU812473 lncRNA upstream 190613 47451457 ~ 47451848 (-) True G714816
TU812480 lncRNA upstream 204981 47465825 ~ 47466150 (-) True G714823
TU812512 lncRNA upstream 260936 47521780 ~ 47522040 (-) True G714855
TU812533 lncRNA upstream 272155 47532999 ~ 47533347 (-) True G714876
XM_021612672.2 mRNA downstream 162114 47051073 ~ 47067973 (-) False LOC110529973
XM_021612673.2 mRNA downstream 172380 47051073 ~ 47057707 (-) False LOC110529973
XM_021612670.2 mRNA downstream 194725 47027194 ~ 47035362 (-) True dnajc1
XM_021612671.2 mRNA downstream 203012 47015885 ~ 47027075 (-) False nebl
XM_021612692.2 mRNA upstream 22895 47283739 ~ 47295303 (-) False LOC110529977
XM_021612691.2 mRNA upstream 22895 47283739 ~ 47295308 (-) True LOC110529977
XM_036985517.1 mRNA upstream 37451 47298295 ~ 47303900 (-) False LOC110529978
XM_036985518.1 mRNA upstream 37451 47298295 ~ 47303919 (-) True LOC110529978
XM_021612696.2 mRNA upstream 136939 47397783 ~ 47439942 (-) False LOC110529981
TU812043 other downstream 51351 47178424 ~ 47178736 (-) True G714425
TU811888 other downstream 172427 47051467 ~ 47057660 (-) True LOC110529973
TU811283 other downstream 904406 46311130 ~ 46325681 (-) True crfb16
TU810338 other downstream 1771839 45457777 ~ 45458248 (-) True G712814
TU808567 other downstream 2690583 44538793 ~ 44539504 (-) True G711133
TU813564 other upstream 1028098 48288942 ~ 48289581 (-) True G715865
TU813956 other upstream 1281447 48542291 ~ 48616523 (-) True dlg1l
TU814203 other upstream 1499068 48759912 ~ 48761163 (-) True G716463
TU814220 other upstream 1521277 48782121 ~ 48782515 (-) True G716480
TU814229 other upstream 1527677 48788521 ~ 48788962 (-) True G716488

Expression Profile