RNA id: XM_036985517.1


Basic Information

Item Value
RNA id XM_036985517.1
length 1706
RNA type mRNA
GC content 0.57
exon number 8
gene id LOC110529978
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 47298295 ~ 47303919 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTCCAGAAGCCCAGGCTGCAATAAAGAGCCATGCGCCCAGGGACACGGGCTGTTTGACACCACAGGCCACCCAACATATTCTCAAGCCACTCAATGATGTCTATGCATGGTGACTAGCCTTCTTCTGACACGCACACGCTCCCGCATTCTCTCGTCTCATACCCACATTCTCCAAGTACAAGGGCCATGCCTCTGCCAAGACGTCGGTCCTCCTTCTTGGACCAGCACTCCGCTGCAGAGCGCCCCGGTAGCGCCAGCACCAGGGCTGGCACCGCGGGCATCACCACAGCCCCCCGGGGCGTCTTTGTGGGGACAGCCCCCACGGGCGGCACCTGCAACCTGGGCACGCGAGTGTCGCGGCGTGCCCTGGGCATCAGCAGTGTGTTCCTGCAGGGGCTGAGGAGCACGGCTGTGCCTGTTATGCCCcatggggctggggctggtggCAGGCAGCACCCCGGGGGTGCTGAGAGCCTTAACTGCTGCCTGATGGAGTACAGGGACAAGGTGCACGCCCTGGAGCTGCTCAACCAGCAGCTGGAGGAGCAGATCCGACACTGCCTGGATCGTAAGGCGTCCAGTGCCGGAGCCTGGGGTCCCCTCAGACAGGACTGGGAGGACGTCTACAGGCAGGTTAGTGAGTCCATCCTTGACAATGCCAGGCTAATGCTGCAGACAGAGAATGTGCAGGCCAATGCTGAGGACTTCAAGGACCGGTATGAGAATGAGCAGCCCTTCAGGAAAGCGGTTGAGGAGGAGATCAGCTCTCTGTACAAGGTGATTGACGATGCCAACCTGACCAAGTCAGACCTGGAGAGCCAGATGGACAGCATGAGGGCTGAGCTCCGAGACCTGGCCCGCAACCACGAGGAGGACGTGAGGGTGCTATACAACCAGATGGCAGGCCGTGAGGTGGACGAACCGGATGCCCCCATTGAGACCAATCTGGACCAGATACTGGCCTACATCCGCTCCCACTGGGAAAGAGTCATCGAGAAGAACCGTGCCGAGACCGATGCCTACCTGGAATACAAGcaggAGGAGAGTGTCGGCAGTAAGCTGAGTcatgaggaggaggagctggagtGTCTGAAGACGGAGTATAACGATGCTGGTTGTAAAATCCAGAGTTTGCAGGCCGAAACCGAGTCCATCAGAGCACTGAAGCGCGGCCTGGAGAACTCCCTGAACGACGCCAAGCATTGGCATGACATCGAGTTGCAGAACCTGGGATCCGTCATTGGCAAGCTGGAGTCAGAGCTGGGCGACGTCCATGGCGACATTGAACAGCAACGCCGTGACTATGAGACGTTGCTGGGCAACAAAATGCGCCTGGAGCTGGAGATCGGCACCTACCACGGCATCTTGGATGGGGAGGAGAGCCGCTACCACCCCTCGATGTGCACAGGTGCATCAGAGCCTGAAGGGAGACGAACTCCCCTTCCTCCCCATTTGGAGCCCCACGGCGGCCCAGCACCTCAAGGTTTCAACACATCTAGTTACTAGTGGAAAGACTGAGGACCATTTGGGGACAAGGCCACTTCTTAATTTTGGTGCTCAAGTTATCATCGACTGTCCTTGGGTTTGGAATAACACCAATGAACATGAAGCTCTCACACCGTTGATCTCCAAGGTATCTGTGCAGTTTCCTTCAGAGACCATGTTCTTACTAAAGAGTGTAATAAAATTGAAACCTCTGCAAGAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU812329 lncRNA downstream 64807 47230125 ~ 47233488 (-) True LOC110529976
TU812331 lncRNA downstream 69002 47228767 ~ 47229293 (-) True G714689
TU812058 lncRNA downstream 89950 47207979 ~ 47208345 (-) True G714440
TU812053 lncRNA downstream 95414 47202652 ~ 47202881 (-) True G714435
TU812048 lncRNA downstream 99951 47197656 ~ 47198344 (-) True G714430
TU812411 lncRNA upstream 48293 47352193 ~ 47388487 (-) True G714764
TU812473 lncRNA upstream 147557 47451457 ~ 47451848 (-) True G714816
TU812480 lncRNA upstream 161925 47465825 ~ 47466150 (-) True G714823
TU812512 lncRNA upstream 217880 47521780 ~ 47522040 (-) True G714855
TU812533 lncRNA upstream 229099 47532999 ~ 47533347 (-) True G714876
XM_021612691.2 mRNA downstream 2987 47283739 ~ 47295308 (-) True LOC110529977
XM_021612692.2 mRNA downstream 2992 47283739 ~ 47295303 (-) False LOC110529977
XM_021612690.2 mRNA downstream 37443 47230087 ~ 47260852 (-) False LOC110529976
XM_021612685.2 mRNA downstream 37451 47230087 ~ 47260844 (-) False LOC110529976
XM_021612687.2 mRNA downstream 37451 47230087 ~ 47260844 (-) False LOC110529976
XM_021612696.2 mRNA upstream 93883 47397783 ~ 47439942 (-) False LOC110529981
XM_021612697.2 mRNA upstream 93883 47397783 ~ 47439942 (-) False LOC110529981
XR_005052883.1 mRNA upstream 93883 47397783 ~ 47439942 (-) False LOC110529981
XR_005052884.1 mRNA upstream 93883 47397783 ~ 47439942 (-) False LOC110529981
XR_005052885.1 mRNA upstream 93883 47397783 ~ 47439942 (-) False LOC110529981
TU812043 other downstream 119559 47178424 ~ 47178736 (-) True G714425
TU811888 other downstream 240635 47051467 ~ 47057660 (-) True LOC110529973
TU811283 other downstream 972614 46311130 ~ 46325681 (-) True crfb16
TU810338 other downstream 1840047 45457777 ~ 45458248 (-) True G712814
TU808567 other downstream 2758791 44538793 ~ 44539504 (-) True G711133
TU813564 other upstream 985042 48288942 ~ 48289581 (-) True G715865
TU813956 other upstream 1238391 48542291 ~ 48616523 (-) True dlg1l
TU814203 other upstream 1456012 48759912 ~ 48761163 (-) True G716463
TU814220 other upstream 1478221 48782121 ~ 48782515 (-) True G716480
TU814229 other upstream 1484621 48788521 ~ 48788962 (-) True G716488

Expression Profile