RNA id: XR_005052883.1


Basic Information

Item Value
RNA id XR_005052883.1
length 7415
RNA type mRNA
GC content 0.46
exon number 16
gene id LOC110529981
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 47397783 ~ 47439942 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTGCCTTGCCTTGTCTTCCTATCCATTGCGCATGTCCAAAGTTAATAATGAAAATGGCTGCTATGGGTTTCATACCTGCCGACGGCGAGAGAAAACAAGCGGGAGAGGATGCAGAGAGCTCAGAGAGGAGTGGCAATGAAGAGGAAAATGAGGACCTGTCatgtgaagaggaggaagaaggaagtGCCGGGAAGGTCGAAGCCGGTTCGTTGAAGCTCCGCGTCGCCGTGAGCTCGGCCCAGACCAAGAAGAAGAAACACAAGCACCGCAGCAAACACAAGCGACAGAAGCACGTCTCCCCAGAGGTCAAGGAGCGGCGCCACCGGCACAAGCACAAGAGGCACAAGCGTAAAGACAACCCCTCAACCGATGTCTTCTCAAACTGTGGCGATGACGACGCTTCCCTGTACTCCTCCTCTGCCAAGCACCCAAGACTGGAAGATGATGAGATGGCACTTCTGGAGGAGCTGGAGAAACAGAGGGCCCTGATCCAAGCCGAGCTAGACGGTGAACTAACTGAGGGGGGCAGGGGGGTACAGTCGGACATGGGGCTCATACTCCAGGGCTACCACTCTGATGAGGATGGGGAGCTTCAGGTGGAGAGGGAGCACAATGGGCAGCACTGGTGTATAGGGGCAACAGGTCCCGGGTCCGGCTCACAGACCGCTAAGGACACCTGTAGAGGACGGCGAGAGTCGACAGATGCCGGAAAAGCTAAGCAGAGCAATCCCAATAAAAATGCCAGGAAGAGCAGGACAGACGGGAAGACCAAGGATCGGATGAGAGGACGGAGCACGTCCAGGGATAGAGACGGCAGAAGACATTCCAGGAGTTCAGTGTGCTTTAGGTCTCCTCCTGGTACCAGCAAGCAGCCTTCCCCACCGGCTCAGAGCAGAGGAGCCCAAAATCAGGAGCCCAGCGGCAGCAACCACAAGTCACCCGAGCACTACAAGGCCAGGTGGCCAGATAAGGAAAGGGACAAGAAGGCGACCAAGTCCCCCGCTAAGGACGCTTCCTCTGGGAAGGAGAACCGCTCTCCAGGCCTGCGAGGGAGGCCGCCAGGCCCCGCCCTCCAGCTGCAGCGCAGCACGTCCCCATCACAATGTCAGAACTCCCTGGACTCATCCTCAGGCCCCCAGGCAGCTGAGCGAAGGGCCATGTCACCGTCACCACCCAGAGGGGGTCACCCACGCTCCCCGGAGAGTCGAAGGAGAGTGATTGACCGACTGAGACTTCCACCTGGCAGGATGTGGAGCCAGGAAGAGGCAGGGGTCCGTAGGGACACTAGCCCGGCCCTAGGTGCCCGGCGACGGTTCAGCCGCTCACCTTTCAGGCGGAGATCGCGCTCTCCCAGGAGATGCAGCAGGTCACCATTCAGGAGGAGGTCGTTGGATCGGTTGGGACGGAGGCTGCGGTGGCGTTCCAGATcccaggagaggagatggagccGGGACAGAGAGGACAAGTTCAAAGGCAGCCTCTCGGAGGGAATGAGGGTCGACAAGGAGGACTCTGAAGATGAAGTGCTGGAAGATTACGATgtggatgaggaggatgaggaggctcTCATTGAACAGAGGAGGCTACAGCGCCTGGCCATCGTCCAGAAGTACAAGGGAGGGAACGAGGGTAGTAACATGTCGGCACCATCGGAGCCCGGCAGCCCCCAGAGCAGCCCACGCAGCCGCTCGCCGTCGCCAGACGACATCTTGGAGCGCGTGGCGGCCGATGTCAAAGAGTATGAGCGGGAAAACGTGGACACCTTCGAAGAAAACATCAAGGCAAAGCACAACTTCATCAAACAGGAAAAAGACGgtacactgAAGGAACCAACCCGAAAAAAACATCCGCCCCTGATATGTTCACTGAATCGGATGACATGTTCGCCGCCTACGATTGATTTATGGTCACTGCAGAGTGCAAGGCTTCGAGCAGCAGGCATTGGGAAGGACTTTAAGGAGAACCCCAACCTCCGAGACAACTGGACAGACGCAGAGGGATACTACCGACTAAATATCGGGGAGATACTGGACAAGCGGTACAGCGTGTACGGCTACACGGGCCAGGGGGTGTTCAGCAACGTCATCCGCGCCCGAGACGTGGCCCGCGCCAGCCATGAGGTGGCCATCAAGATAATTCGGAACAACGAGCTCATGCAGAAGACTGGGCTGAAGGAGCTGGAGTTCCTTAAGAAGCTCAACAATGCTGACCTGGAAGACAAGTTCCACTGTCTGCGGCTCTTCCGACACTTCTACCACAAGCAACACCTCTGTCTGGTCTTCGAGCCTCTCAGTATGAACCTGCGCGAGGTACTGAAGAAGTATGGCAAAGACGTGGGCCTCCACATCAAGGCGGTGCGCTCTTACAGCCAGCAGCTCTTTCTGGCCCTGAAGCTGCTGAAACGCTGCAACATCCTGCACGCCGATATCAAACCTGACAACATCCTGGTCAACGAGTCGAAAACCATCCTAAAGCTCTGTGACTTTGGTTCAGCGTCGCACGTGGCAGAGAATGACATCACGCCCTACTTGGTCAGCCGGTTCTACAGGGCGCCTGAGATTATCATCGGGAAGCCTTACGACTATGGGATCGACATGTGGTCCGTTGGCTGCACTCTGTATGAGCTGTACACGGGCAAGATACTTTTCCCAGGGAAAACCAACAACCACATGATTAAGCTCGCCATGGACATCAAGGGCAAGATGCCCAACAAGATGATCAGGAAAGGCGTGTTCAAGGACCAGCACTTTGACCAGAACCTCAACTTCCTGTACACAGAAGTAGACAAAGTCACTGAAAGGGAGAAGGTGACAGTGATAAGCACCATCAACCCCACCAAGGAGCTGCTGGCTGACATGGTGGGCTGCCAGCGTCTCCCTGAAGACCAGCGCAAGAAGGTTGCCCAGCTCAAGGACCTGCTGGACCTGACCCTTATGCTGGACCCGGCCAAGAGGATCAGCATCAACCAGGCCCTGCAGCACCCCTACATCCAGGAGAAGATCTTCTGAGCATATCTTACTGTACCACTCACAGTCATGCATTGATTGATTGACACATCCAGAAGCTAGTACTGAGTCCCTAGTTTGACTATGTTTGGACCCCACCCCAGCccaataaatgtatttatttgagcTGGCAGACTCTGCTGATGGAGAGGAAGTAGTATTATCTTTCTTCCCCTGTTTGAacaacacacacatgctctcCCGTTTTACATTGATCTAAGGACTTGTATTATATAACCATAGTAGGGGTGTGAACATTTCAATGTTTAATCGAAATTGAATCCTTAATGttaagggaaaacatttaattgtgtttttttttttttttctacaaaaTTTAAATCCcagtgcagttatcacaaaacTACCACTAACAGGTCCTGATCATCATAAAGGGAATAGGCCTACCTAACACAACAATGCTGTAACGTTAGTAAGAGGGGATATGCATCCGCACGTCATCGTCGTTAACAGTTTGAAAAAAAGTGCTTATTACAGTTGGTATGCATCTGTTTTCAATGGACTATTTGAGTTGTGAGGTCATTTGTTAAATGAAGAACTGCAAACGCCATTTGAGCCTCGACTCACGCTACTGAAACGGGTGCGTCTTTCTCATAAATTTCGCAGTTTACTCCCATTTCAACAGGGTGTTATTCCTTTTATAATGGTAGTTGAGACATATAGTCAACAGCATTAGAAAGCTAAAATGATTCCCTTTTTAACCAATCTGTATTTAGTGGGATTTCTTTTGCCCTGTGTTTAATTTGTGAGCTTAAACTTGGTGGCAGGCTTTTGTTAATCATGAAATAAAGTAGACCCCTAGACTATTGAATACACAATTTGCCttcatcaaaataatgtttttgtttcATATTTTATTATGGAACCTGCTTAGGTTTAGGGGGGGGTTGTAACCTATTCTAAATGGAACACTATAGCAGTTCACAAAAAAGCCTAAAATAGCAACTGCAGTTATTCCAAAtcatgataatgcccttttagtgtaagagctgtttgagaaGACAGCCTGAAATTTCAACCTGTTTTGGTGAGAtgaagttttggcctgcctggtgacatcactggGTGGGAAATTAGTtaagaccaataagaaagagttccaaacctctctttcAATAATTTTCAGTTTTCCCTTCCCCACTAAGagcactcccagacagtcctagcaaaattcttgcttgtgAAATTACTGttagctaagaagctatttttgtttctttttgaccattttaattgaaaacattcacggtaaggtacttaattgttacccagaaattatttgatattgagataaaaatggctgtaTTAGACCTTTAAGGCCTATTGGGAGCTTGGGTGCATGTGTGTAGAGGGAGCGGTCGGATCGTAATTTCACCTGCAGAAGCCCATTCCAGATGCCACCTACTGTAAGCCCACGGTAGAACTTAATTTCCCCCTAGCGGTCATACCATGCAATATGATTTGACATGGAATTTTGTTAAATGTTCTTATCGTTTTAACGGggggaaaactttttttttttaaatggcagttTAAACGTTAAGAAATATTTtccatttgtcacatccctaaACCATAGTAGGGCTCCAAGCAGAATGTCTGCTTTACAACATATTTTCCATCTCCGCCTACCTGCAAGCCAGATAAAAAGCTTATAATGACGCACTCATAAAGAGTTTTGAGTTTCATCCACTTggattttcagtttttgattggcCCCTTGCAGGTGACTGAAGGTGGATGATATTGTAGCTGTAAAAATATAATTCTGATTGTTGGGGTTTACTGTCATTCACCAGTTGCCAAGGCTGTGACGAGCAGGGAGGGGGTCCAGATAATGATCACAGTTATTTAACTTGGGCTTTGTTTGATTGGTCGCAACCCAATTGTTCGTAACCCAATGCCCTAAACCTTTTGAATGGCATGTTTGTACAGTCTGTAGAAGGTGAAGTCTTGCAGACTTGGCAGCTCCTTTGACTTACTATTATTCTGTGCGGTTATTACCTGTCAtgccctgtgttgtgttgtggtgcaGGGCCAGCGTAAATGCTATTTATATCCACGTCTCCCCCAGGTATTGAAAACCCAGAGTGCTCCCCCACTCACCCCGTCCCCCACCCTGGTGTCTGTGCAGGCCCTGGTCCGCATGCCCGTTCTGCCGCTGCCTGTAGGTCTGTCAGTGCTGAAAACCCAAACTGTTGGGGGTCCTACTTGAGCCCACCTGCAGGGATGGCCCCTCCTGTTTAAAGCAGATTGTATACCACTTTCAGTACATTGAAGGTAAGCTATCCCCCCTCTTCCAAAAAACAAAACCCATCAACTTCACCTGGTTATTACCtcgtatgtttatttatttttaaaatatattttaatattgTACACATTGTTTTAGCCAGATGCCATAATAGACATGGTTTACATGTTGTTTAAAAATATGTCAAAGACAAACTGGATAAAAGTAAACTTAATCAAGTCACGCACCCAAATTGTGGAGAGGAAGTTGGGTCGGGTATGGGGGGGCTGCATTCAACAAGCTATGATGGACAAGAGCACCTTCAGTGTACTTATCTTAATGGAACAGCTCAGAATTTATTGCTCTCCTGTAACGAATACCTTTTTGTTTTTCATGTGTTCCCTTGATACAATGTTAGAAACTGCATGTGAGGATAGCAGTCTTGCTATGTATTCAAACTCATGTGTTGCAATTATTTTAGGCATGTTCCTCTAAAAAAGAAGGATATTTAAGTGTTTTGTTTCCCTCTATCATTGGTTTTCATGTTTTGTATGACCATGTTGTCTTTTGATACAGGGATATTTATTCTCTGAGCTTTGAGTCTGCTTGTTATGAGCGGTAATTGCCTCTACTTTATTTTGTGTTATATATTTTAATGTTCTTATAGGAGCAAAACAGAAATAAAAGAGCCCACACATGTGTAGCTGATGGAGAATTTATGCCTTTTTCCACAAATGTCTTCCCTACATACACATGCCAATGTTCAGGCCCCTTTAAGTGTCTAACAATTAACCGAAATTCTGTATTTTTAAAACTAATCCACAAACCTTAACTAGAATACTTTCGTTTTCATCAGCTTTTTGTGCAGTTTTTAGGCTGGAATCCCAACTTGATTTGTGCGCATAACTTGATGAACAcagatctcaagttaggatttggCACTTGTATGCTAAATTTAGTTTCAAACCAAATAAGCAAAAGAcaacacaaaaaatatatatttttgtgtgcTTTTTTTTACTGACACTAACTGATGTTTGATGTTTTTCCCAACAATGATGTTTCCTGTGGTGgctgagagcgagacagagcccAGCACCTTCTCCAGCCTGGGCTCCACTTTCAGAGAGACAAGACCTCCACAAAGCCACTTATCAAGGTCCTTTTTGATGGCATGGGTGCTGCCACTTTAGAGAAGAAACTCACAAGGAACCTCATATGGACAAAGGTTTCTGTTCTGGAGATAGTTACTGTATTTGTAAAGGTGGAGTCGTCAATATGACAATCATACAAAACGGGGCAAATTACTGCATACATAAATCAACAACAGTATTCAAATCTTCTGAGATTGCTACTTGAGGCTTTTCCCAATCTGGGCGAGGCTCAAGGGAGGGTGCAGATTTGGCATATTTCTTATTCTGTTTTCTTTAAGCAGAAAGAAGCCCTGCTGTGTATGATGTAATTTTGATAAGTCAACCTTTTATAGACATGatgtcatgatctgatttgctgTTATTTTTCAAACATGTTAGCAGAAACTACTGTAGTTACCATAATGAGCCAGTATTGGACACACCGGGTGATATTTTGGACCCATTATAGATATTTGAGATTTGTTCATGAACTCAATGCTTTGCTTATGGATTCTGAGCAAAGCCAAATAGATGGCAATCGTATTAGGTAATTTAGATTGAACATATGTTACAATTTGGCTAAATCTATGCCAAAGTGACCATCAACAATAAGGTAATACCGTTTCTTGTTATTGATAAATATGGCCAGATTCATATCACTGTGTTAACGTTGcaattttgtgtttatttttcaGGGTAAGTCAGAACTTATTTTCCCTGTCTGGGTTTCATCAGTCTCCTTTTTCTGCTTTGGTGCACATGTAAGACTCAAGGCCAGAGAGATGTTCAACAATGGGCCCTGTAGATATTTCTCAGAAACATTTTAAAAcagaaatgtattaaaacataTGGAACACTTTTGTCCATGTACTTAACTTTATTTGTGTAATCCAACCCAAATAATCGGACACCACTTTTTCCAATATATGATAACACATCTATGCATATTTTGTCTGCTGTTGAGAACATAACTTGTATTCATTTTCACGTGTGTTTTAATATAATAAACATGTCTGTGAAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU812411 lncRNA downstream 9296 47352193 ~ 47388487 (-) True G714764
TU812329 lncRNA downstream 164295 47230125 ~ 47233488 (-) True LOC110529976
TU812331 lncRNA downstream 168490 47228767 ~ 47229293 (-) True G714689
TU812058 lncRNA downstream 189438 47207979 ~ 47208345 (-) True G714440
TU812053 lncRNA downstream 194902 47202652 ~ 47202881 (-) True G714435
TU812473 lncRNA upstream 11515 47451457 ~ 47451848 (-) True G714816
TU812480 lncRNA upstream 25883 47465825 ~ 47466150 (-) True G714823
TU812512 lncRNA upstream 81838 47521780 ~ 47522040 (-) True G714855
TU812533 lncRNA upstream 93057 47532999 ~ 47533347 (-) True G714876
TU812708 lncRNA upstream 228027 47667969 ~ 47673891 (-) True G715048
XM_036985518.1 mRNA downstream 93864 47298295 ~ 47303919 (-) True LOC110529978
XM_036985517.1 mRNA downstream 93883 47298295 ~ 47303900 (-) False LOC110529978
XM_021612691.2 mRNA downstream 102475 47283739 ~ 47295308 (-) True LOC110529977
XM_021612692.2 mRNA downstream 102480 47283739 ~ 47295303 (-) False LOC110529977
XM_021612690.2 mRNA downstream 136931 47230087 ~ 47260852 (-) False LOC110529976
XR_002474329.2 mRNA upstream 215110 47655052 ~ 47656068 (-) True LOC110529117
XM_021612703.2 mRNA upstream 286848 47726790 ~ 47894176 (-) False LOC110529987
XM_021612708.2 mRNA upstream 889742 48329684 ~ 48343010 (-) True LOC110529989
XM_036985531.1 mRNA upstream 916062 48356004 ~ 48429216 (-) False dlg1l
XM_036985532.1 mRNA upstream 916062 48356004 ~ 48429216 (-) False dlg1l
TU812043 other downstream 219047 47178424 ~ 47178736 (-) True G714425
TU811888 other downstream 340123 47051467 ~ 47057660 (-) True LOC110529973
TU811283 other downstream 1072102 46311130 ~ 46325681 (-) True crfb16
TU810338 other downstream 1939535 45457777 ~ 45458248 (-) True G712814
TU808567 other downstream 2858279 44538793 ~ 44539504 (-) True G711133
TU813564 other upstream 849000 48288942 ~ 48289581 (-) True G715865
TU813956 other upstream 1102349 48542291 ~ 48616523 (-) True dlg1l
TU814203 other upstream 1319970 48759912 ~ 48761163 (-) True G716463
TU814220 other upstream 1342179 48782121 ~ 48782515 (-) True G716480
TU814229 other upstream 1348579 48788521 ~ 48788962 (-) True G716488

Expression Profile