RNA id: XR_002474507.2


Basic Information

Item Value
RNA id XR_002474507.2
length 1115
RNA type mRNA
GC content 0.47
exon number 5
gene id LOC110530333
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 64539032 ~ 64544585 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aaagttcaagggggccgaatactttcgcaaggcactgtaagcatTGGCAATAGTCATTGACTAGTCAAGCAGCGCCGATGGAGAGCCGACTCCCTGTCGTGACCCAGGGGAGTCAGAGTTTGGAGGAGGGCTGAAGTGAAGTCAGGCGGGCACTAGTGAAGTGATCGATCTGATTGGACAGACTTTTGTCAGTGGTAGCTGACCAGTGTGATTATGGCCAATAGCAAGCAGACCATGTCAGTGGAAATGATGATAAACCTGGGTGATGGTGGTAATCGCAAAAGAGCTGCCTCCTCAAACACTAAGCCCACTGAGTCAAGAGAGAACAGTGGCGCGCACCACTGcctgactctccctctcctctgggaTTTTCCATCCTGTCCGTGACTGATCCCATACAACACGACACTGCCCTCATTTATATGGCATAGTATATCTGTTTTTATCTGGCTTTGTAGCAATGTTTTATACCACATGCCAACTTCCTTTTCCCTGTTTTTATCCTTTTGATCAGAAAACATGAATGTAGAATGTAATGTTGAAGGGATAAATGAATGTACACCTTTCTTCCCTCCAGACACAGGATGGGTGTTCCCGGAAAAATAACAATGGATCAAGTGAGAGAAGAGCATCTAATAGTGAAGGTGATGAAACGTCACATAGAAGAATTGCAAAAGTAAAGTGGAGGTTTGAGAGTGTGCTGAAGTTTAAGCCCCAGGCACCACCAGGGTGGGAAGGCTGGGAGGAATAGGAAGCGACGTGGCGGTAGGAGAGCATCCTGCCACATCAACCAGCACACCTTCTTTACTGAAGAGGGAGATATCACAGAGCCCAAGCTGAGCAAGACCTTTCAAAAAATCACATGTCCTGATCTGTCTTCAGGTTCAGAGGTTCCTCCAGAAAGTTCAGAGAGGAATACCCCTCTGGAGTTGGATAGTACTGAGCAACCCTCTCATCAGAACCTCTTCACCAGAATAGAAGATGAAGAGGATGATGAGATTCAATTCAGAAGAGAGGTGTACTCACTGGACATACCAGACTACTTAGTTCCCGGAGCACCTGAACACAATAACACAGAGGCTACTGGGAAGGAAAAGAAGAACAATAATACCAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU834441 lncRNA downstream 35753 64502361 ~ 64503279 (-) True G734833
TU834500 lncRNA downstream 38079 64498293 ~ 64500953 (-) False G734886
TU834499 lncRNA downstream 38079 64498338 ~ 64500953 (-) True G734886
TU834153 lncRNA downstream 178267 64360322 ~ 64360765 (-) True G734574
TU834142 lncRNA downstream 185607 64352841 ~ 64353425 (-) True G734564
TU834438 lncRNA upstream 1860 64546445 ~ 64549891 (-) True G734830
TU834436 lncRNA upstream 2313 64546898 ~ 64547693 (-) True G734828
TU834506 lncRNA upstream 25567 64570152 ~ 64570636 (-) True G734892
TU834507 lncRNA upstream 26246 64570831 ~ 64571111 (-) True G734893
TU834531 lncRNA upstream 57015 64601600 ~ 64601960 (-) True G734917
XR_005052930.1 mRNA downstream 64 64532271 ~ 64538968 (-) True LOC118965543
XM_021613294.2 mRNA downstream 10364 64511556 ~ 64528668 (-) True LOC110530332
XM_021613293.2 mRNA downstream 15575 64511556 ~ 64523457 (-) False LOC110530332
XM_021613292.2 mRNA downstream 27806 64505917 ~ 64511226 (-) True LOC110530331
XM_021613279.2 mRNA downstream 197959 64336685 ~ 64341073 (-) True LOC110530326
XM_021613300.2 mRNA upstream 12712 64557297 ~ 64620048 (-) True LOC110530335
XM_021613301.2 mRNA upstream 86360 64630945 ~ 64640936 (-) False LOC110530336
XM_021613302.2 mRNA upstream 86360 64630945 ~ 64640936 (-) False LOC110530336
XM_021613303.2 mRNA upstream 86360 64630945 ~ 64640936 (-) False LOC110530336
XM_021613304.2 mRNA upstream 86360 64630945 ~ 64640936 (-) False LOC110530336
TU831229 other downstream 2353852 62180687 ~ 62185180 (-) True LOC110530961
TU831141 other downstream 2490913 62045035 ~ 62048119 (-) False G731764
TU825771 other downstream 6675155 57862738 ~ 57863877 (-) True LOC110530228
TU825774 other downstream 6692343 57820047 ~ 57846689 (-) True G726900
TU825750 other downstream 6727610 57805388 ~ 57811422 (-) True G726885
TU835604 other upstream 445716 64990301 ~ 65040241 (-) True G735880
TU835971 other upstream 973582 65518167 ~ 65528583 (-) True G736216
TU836724 other upstream 1556511 66101096 ~ 66101627 (-) True G736841
TU836773 other upstream 1649069 66193654 ~ 66209991 (-) False LOC110530385
TU837419 other upstream 2014611 66559196 ~ 66560517 (-) True G737449

Expression Profile