RNA id: XM_036986002.1


Basic Information

Item Value
RNA id XM_036986002.1
length 5378
RNA type mRNA
GC content 0.48
exon number 13
gene id LOC110530374
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 66076814 ~ 66096951 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGTGCTGCTGGCAAAATACTAGTCTTGAAAATTAGTTACTGAGCTAGCTATAATCGCAGTCATTTCCGTCGAATATCCCATAACCACTCGGCTGCGGTGTACGGATGAGTACTGAACGATTATGTAAAGTTCTGACACATTTGAATGAATTGATAATTGCTAACAAGTCCTGCCGAAGAGTTGATCATGCTGAAAATTAAGATTCCCATTCGAACGGCGGAAGGAGACCATACCGTCGAAGACGAGCAGGAAAATACCGATTGCAGCAGTCACACTATTGATTCGGTTCCATATTGTAGTGTGAGGTTCAAACATTCAACGGGGGAGTCATATCGCCAGTGGCAAATTGACAAGAAGGCTGTGTTTGAGTGGTTCGGCTTGCACCTCAGCCCAGCGAAGCGGATAGAGTTTATGTACGGACTACTTCATATGTGTCAACCACTTGAGATTCGCTTTTTGGGATCATGTCTTGAGGATCTTGCACGGAAAGATGTCCACGTTTTCCGGGACTTTGAGATAACAGCAAACTGTCAAACTGACTTGGCCTTCCTTAAGGACGTTAGCGATCCTGTTGTGCGTTCCAAACTACTTGTCTACCTGTCACTTTTGCGATCTGGAAACAGAGAATGTGCGGACACACTGTATCGTGCTTTGAGCCATATAGACCCAGCGCTGTACTTAAATACTTATCATGGCGTTCCTTTATCTCCACGTGGTGGGAACACTCAGAATGTACCTGATCAACATTGCCCTCGCGAGGGTGGAATTGAGTCTGGGAGATCTGTGCATCCCAGCGGGACTCCACTGGAGGCAGAGTCGGGTTCCCTGGAGCACTTGGCGCTGCTTTTCACCATGGCCTCACTACACCCTGCTTTCCCTTTTTACCAGAGGGATACTGTCAGACACCAGTTGGATAATGTGGAACTGGTCTTAGAGGAGAGAATGGATTGCCACAAACGCATGAGTTTCCAGCAGAAGCAGCATGCCCTTCGAAGGGAGGATCTCAGCCCCAGGAGCACTGACATGGGTCAGTCGGCCTGCTGTATTCCCAATCAACTCCCCAACAGGACATCATCCCAGAGAGAAGAAGTTCACATTGACAAGATTGTGCTAAAGACGATATCTTGGAACCGAGTAAGCAGTGAATACAGTATTgagGTCCAGTGGTCTGACTCAACATGGACCACAGTGACCAAGACTCACCATGAGCTGGGTGACTTCCTGTCCAAGAGGTCCACTGAGCCCTTTGAGAAGGGCCTGGTGAGGTTACTGGCCCAGGAAGACCAGTATGAGCCCAGGGACCTGGAGAGGACACTACAGGAGATGCTTCTGTCAGCCCCAGCAGCCTTCAGGCGGAGACGAGAGGTCTGCAGGTTCCTCCTCCCCCACTGCAGCCACTATAACACAGTACCTCCTGGAAAGACCTGTAAGGCACCTGAGCACTTTAAAGAAGACTGCACTGAGCCATCCAGTCAGGACCATGACATAGGTTCTCACCACCTAAGGCATCAGACGGCGTGCAGCAGCAAGAGGCTAGGCCAGGGCACACGGATGACAAAGAGCAGCCAGAGTGAGAGCCAGAGGCCTGCTGTTCACGCAGAGCACAATGGAGTGATGCAGAGGAGGAGGAAACCAGGCATCATGACCTGTAGGCCAGACCCACATCAGGTCAGTCGCACTggcctctcctttctctctctggcctgGCCATTAGAGACGCTGaaCGCAGATGAGAAATGGGCTTTCACTCCAGAAAAAAAGAGCAGAAGAAGACTAGGTGGAAGGAGAAGTGATGGGGCTAAAGGCTACATACCCAGCAGCTTCATCAGACCACAGTCAACACACATGACCAGACAGGGTGCCAAGCCGGTCCAGAACAGGTATGGAGACACGTGGTCCGATAGCTCCAGTACTCCCTCCAGTCCCCAGCACGAGGCACATGAGAGCCTGGATATTGAGGACCTGGACGACGAGAGAGACACTGCTGAGAGTTACTCAGACCACTCCATCCAGGAGAAGAGGGCGAGTGATGACAGCAGAGGGGAAGTTGTAGCTACTGTACACGCTATAGTCCCTGTCCCCTACAGAGAAGAGACATCCTACACTGGCAGTCCCCTGAGTGTACACCCTCTATCAATGACGGTCCAGAATGGGCGAACCATGCCAGACAGGACGGTCATGGTCACTCCACAGCCAGGGGACGGTTCACCAGCAGATGGGGCACTGACTGGGACCACCTCCATGGTTCCTCAGGAGTCCATCCCAAGCCAAGCTTCCCTGGGAGACCCTGAGAGGCAGGGGCACGTGTCTGCCCCCCTGAGCTCACCTCAGCTAGCCAATTTAGGATCCAGCATTCACCTAAAGCCCCAGTGTTATATGACCCCTACCAGCCCAGAGAGTAGAAGCACTAACCCCCATCACCAGCCCCCAATGAGCGCCATCAGTGTCATCCCCCTGACCTTCCACGTGTGCCCCCTGAGGCCAGCATACACCAGCACTGACCCAGCCTCCACCGCCACCCTACCCCTACCAGCCTCTCTCCCTGACCCTAGCACCAGGACCCAAGCCCTGGCTGCGCCCACCAGCCTACCCACCCCTACCTCCGTGACACCCTCCTCAGTGGCCACTGTCACCCCAGCTGCAATCAGCCAGGTTCAGGCCACTCTGCCCCCAGCCATCCCCACTCACACCCCCGGCCCCGTGGCCAGCCCAGCCCTGACCCTCATCCACAGCACGGCCCAGGGAGATGGTGCCTCCTGCAGCAGCTCTTGGGTGGCAGCAGGGCAGGCCCAGACCCAGCAGCAGGCCCTCCCTCCACAGCAACAGCAGATGAGCTGCAATTCCTGTGGTTGCCGTGGCAGCTGTGGTAATAGCCACTCTACCGCCCCCAGCCCcaacttctccttccctccccagctGGGGCGCCAGGTCTTCAGCAATgcccacctccctctcttccacctcccATCCATGTGCAGCACTGGATATCCCAGCCACCGCAGCCAGGTCCAACACCAGAGCAACGCCACCACCCAGCTACCATTCTACCCCCCTCCACCTCACACGGCCACCCCCACCTCCACGCCACCTCCACGCCACTCCCACCACATGCTGGTCACCCAGGCTGGTTACAACCTGCAGCAGATGGCAGCGGCTCCCTTCAACAGCCTCTACACGCCCATGTTCTCCTcgttgggactgggactgggcaCGGGCACGATGAAGAGCAGTGCCAACTTCTCTTGCTATAACTGTGGGCTAAGCGGGCATTATGCCCAGGACTGCAAACAGCCCTCCATGGACGCCGGGCAGCAAGgtgaCTTTCGGCTGAAGCACACGGCCGCCCACTTCTTTGAAGCAGACCAAACTGACTGACATGAGGGGACCAAGGCAATGCTTTGTTTCTCACTACAGTAAAGATTCCAGAAAATGTTTTCGTGGGTTGAGTTTTTCACCAATTGTATTACTTTGCAAATATCCGGACTTGTTTCTCAGCAGAGAATGGAATCCTGTATCATTCTCAGACTTTTCAGGGCGGTGGTATTTTGCCCTGAAGTACAAGACAGGCTCACGTTTCCAGACTAGTCTATTAAAGAAAGAGAACCACATCTTTAAATGGTGAGGTGGTAAACTTGCATTTATTAAGGATTAATGGATTGGCTGAAGGTTGTTATATCCACATTTCAAAGCAGGTCTTTTTAGTACTTTTCAATTAGTTTCTTACTTTTTTATATTATCTCATAGGTGTTCAAAATGCAAGATACAGTTTCAAAGCAGCTAGTCGTTAACCAGCTAATTTTAATTTTATTCATGCGAGAACAAAATATGTGAAGAACCTCACGCTCTTATTTTTGGGGGATTGTGATAAAGCGGAGAAAAGATGCATGGTTTATAAGATAACGTATGTATGACATAATTAGGTTTTTGACAGAATATGCTGAATGTACCATAAATACCCTGTATTTGATCTGTTTTACAAGCTAATGGTATTCCATTGGAGGGAAATTTTGTACGAAAAAATTGTTTTATCGCCGTTTGTTACCACTTGATATAATGTGAAGCGTGTATTAAGTCAATCCTGTCTCATTCATGATGTTAATGCTGCTGCTGTTTGGTTTGTTTCCTGGGGGCAAAAATTCACTAATTTGTGTATATGTGGGTGGGTCATGTCCCCAATGCTCTCAGGCAATGAGAGGACTCTTGTGGTTGTATCCCTTGAGCGTCTCTCCTCTAGGAAGAGATTTATTGAGGTCCAAATCAACCCCCCACCCACCAATAGGCACTTGGGACGATCCAAAATCACCCTAGCCACTTCGGAAATCTGAATGCATTGGATAGGTTAAATCAATGGTGAAAGCTTTACCTGAGCTTGCCTTCTGATAAGCCAAGTGGAACTCTTGCCATATTGCCTTCACCTAATACAATACTTCCTGATCTAAGGTTTGATTTTTGGATTGGGCTACAGAATCAATGGTCCCTTGTCCTACCGCCATGCATGTACTGTACCTGTTGAATGTGTGGCTCCTGCCTGTTTGTGTAGGCGTGTCCAGCTCTTTGTTGCCAGAACCTATGTGCCATATTCCTCCTTTCTCATGCAGCAAGGAGGTTGTAGTATGCATGTAAGTGTGTATTTGTGCACAGCAGTAAGGGGCTAACTTCACACACATACCTTGCCTGTATGATTGACAACTATACAGAATAACTTCTGTATTAGAAAAAAGGTAACACGGTTGTTTGTGGGTTTGAAAGCCACTTGTCTTTCACTGTTCGTTGAGGTGGATTGTTTTGTGTTTTCCACACACAGGCAAAAACTATGTAAACTATTTGAAATTACATTCAGGTAAAATCACTGTTTTATAAAGTGGAACTTATCCTCTGTTTTTCTGTAagcagcttttaatttttaattttttttattttatttaagtaTTTTATATTGGATTTCAGAGGCCTAGTTGTTGACTTTATTTTAATGAATATCTTTATTTTGATAAAGAACATTAAAGTTGAGTGGAAAAATAGACTATCAAGCTTGGGTTGTATTTGTTTAACTTCTCTATAGTTAAAGATGCTGTGCTGTAGATTAAGGTAGTGTTACCTCTGATGCGATGACTGTATTACTAAATGTTAACATGTAGTCACTGAAAGGGAAGACGACAATAGTTCCTTCCTGTGCTAAATTAAGCTACCAGAATTTTTTTCAGTTAAGTTGGTAGCAATCAAACAGCtaagtttatatatttttttatatggcGAGAAACCCATACTATAATGAACAAAGATAAATGCAATTTCAAACAttttaatgagttacagttcatatgaggaaatcagtctatTTAAATAAACAAATTTGCTCCTAATGTATGGATtgtaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU836711 lncRNA downstream 261 66075644 ~ 66076553 (-) False G736833
TU836710 lncRNA downstream 261 66075699 ~ 66076553 (-) True G736833
TU836701 lncRNA downstream 11417 66064989 ~ 66065397 (-) True G736831
TU836697 lncRNA downstream 15921 66060650 ~ 66060893 (-) True G736827
TU836696 lncRNA downstream 17675 66058894 ~ 66059139 (-) True G736826
TU836723 lncRNA upstream 2777 66099728 ~ 66099930 (-) True G736840
TU836739 lncRNA upstream 20821 66117772 ~ 66117974 (-) True G736856
TU836741 lncRNA upstream 22999 66119950 ~ 66120476 (-) True G736858
TU836780 lncRNA upstream 71531 66168482 ~ 66169062 (-) True G736893
TU836774 lncRNA upstream 101277 66198228 ~ 66199927 (-) True G736888
XM_021611271.2 mRNA downstream 181764 65893969 ~ 65895050 (-) False LOC110529131
XM_021613359.2 mRNA downstream 194435 65738261 ~ 65882379 (-) False LOC110530368
XM_021613357.2 mRNA downstream 194437 65738261 ~ 65882377 (-) False LOC110530368
XM_021613384.2 mRNA upstream 95408 66192359 ~ 66210028 (-) False LOC110530385
XM_021613383.2 mRNA upstream 107484 66204435 ~ 66210028 (-) False LOC110530385
XM_021613388.2 mRNA upstream 176837 66273788 ~ 66332260 (-) False LOC110530388
XM_036986007.1 mRNA upstream 176837 66273788 ~ 66332261 (-) True LOC110530388
XM_021613393.2 mRNA upstream 241319 66338270 ~ 66365785 (-) False LOC110530389
TU835971 other downstream 548231 65518167 ~ 65528583 (-) True G736216
TU835604 other downstream 1036573 64990301 ~ 65040241 (-) True G735880
TU831229 other downstream 3891634 62180687 ~ 62185180 (-) True LOC110530961
TU831141 other downstream 4028695 62045035 ~ 62048119 (-) False G731764
TU825771 other downstream 8212937 57862738 ~ 57863877 (-) True LOC110530228
TU836724 other upstream 4145 66101096 ~ 66101627 (-) True G736841
TU836773 other upstream 96703 66193654 ~ 66209991 (-) False LOC110530385
TU837419 other upstream 462245 66559196 ~ 66560517 (-) True G737449
TU837387 other upstream 616742 66713693 ~ 66714496 (-) True G737422
TU838543 other upstream 1284269 67381220 ~ 67381977 (-) True G738472

Expression Profile