RNA id: NM_001124561.1



Basic Information


Item Value
RNA id NM_001124561.1
length 735
RNA type mRNA
GC content 0.56
exon number 4
gene id igfbp1
representative False

Chromosome Information


Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 69150343 ~ 69157726 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ATGCTTGGATTATATAAGAAGTTGACCCTGCTGGCGGCGATGTCATTGTCCCTCCTGACCACTCTGGCCCAGTCTTCCCCTGTGGTGGGCCCGGAGCCTATTCGCTGTGCCCCCTGTACCCAGGAGAAGCTGGATGAATGCCCGGCCATCTCCCCAGACTGTAAGCAGGTTCTCAGGGAGCCAGGCTGTGGCTGCTGCATGGCATGTGCCCTGGAGAAGGGGGCCTCCTGTGGGGTATACACGGCCCACTGTGCTCAGGGGTTAAAATGCAGCCCAAGAGCTGGGGATCCTAGACCCCTCCACTCCCTCACCAGAGGACAGGCCATCTGCACTGAGGACCAGGGACAAGAGAAAGTAGAAGGGGTGCCAGACCACAGCTCCCTAGCCTACTTCCTGGGACTCAACACCCCCTTTGACACCAAAAATGAGGGTGCTCAGGAGAGCATCAAGGCCAAGGTCAACACCATCCGCAAGAAACTGGAGGAACAGGGTCCCTGCCACATTGAGCTGCATGCAGCTCTGGACAAGATAACCAGCTCTCAGCAGGAACTAGGAGAGAAGTTCACCAACTTCTACCTACCCAACTGTGACAAACATGGCTTCTACAAGGCCAAGCAGTGTGAGTCGTCTCTGGTGGGACCCCATGccaggtgttggtgtgtgtccTCCTGGAATGGGAAGAAGATTCTGGGGTCCAATTATCTACCCGGCTTAGAGTGCCAGCTGGAGCTCTAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU840734 lncRNA downstream 1497 69146733 ~ 69149813 (-) True G740468
TU840745 lncRNA downstream 82117 69068630 ~ 69069193 (-) True G740478
TU840696 lncRNA downstream 126438 69024018 ~ 69024872 (-) True G740448
TU840685 lncRNA downstream 144703 69006333 ~ 69006607 (-) True G740438
TU840684 lncRNA downstream 145079 69006005 ~ 69006231 (-) True G740437
TU840728 lncRNA upstream 23909 69181468 ~ 69183197 (-) False LOC110530970
TU840730 lncRNA upstream 23909 69181468 ~ 69240965 (-) False LOC110530970
TU840733 lncRNA upstream 23909 69181468 ~ 69183197 (-) True LOC110530970
TU840880 lncRNA upstream 93340 69250899 ~ 69263627 (-) True G740604
TU840964 lncRNA upstream 198355 69355914 ~ 69357766 (-) False G740684
XM_021613484.2 mRNA downstream 156050 68908995 ~ 68995260 (-) True LOC110530426
XM_021613482.2 mRNA downstream 243122 68901719 ~ 68908188 (-) True LOC110530425
XM_021613483.2 mRNA downstream 243197 68901719 ~ 68908113 (-) False LOC110530425
XM_021613478.2 mRNA downstream 295276 68834340 ~ 68856034 (-) True LOC110530423
XM_021613480.2 mRNA downstream 295278 68834340 ~ 68856032 (-) False LOC110530423
XM_036986062.1 mRNA upstream 25608 69183167 ~ 69232994 (-) False LOC110530970
XM_021613494.2 mRNA upstream 276983 69434542 ~ 69450423 (-) True si:ch73-40a17.3
XM_036986849.1 mRNA upstream 304361 69461920 ~ 69474389 (-) True LOC118965618
XM_021613495.2 mRNA upstream 319747 69477306 ~ 69487134 (-) True LOC110530436
XM_021613499.2 mRNA upstream 379609 69537168 ~ 69553690 (-) False LOC110530438
TU838580 other downstream 1725971 67423863 ~ 67425339 (-) False G738504
TU838577 other downstream 1730254 67420739 ~ 67421056 (-) True G738502
TU838543 other downstream 1769333 67381220 ~ 67381977 (-) True G738472
TU837387 other downstream 2436814 66713693 ~ 66714496 (-) True G737422
TU837419 other downstream 2590793 66559196 ~ 66560517 (-) True G737449
TU841006 other upstream 251409 69408968 ~ 69430653 (-) False G740718
TU841403 other upstream 568215 69725774 ~ 69727379 (-) False G741077
TU841404 other upstream 568215 69725774 ~ 69727431 (-) True G741077
TU841504 other upstream 624730 69782289 ~ 69783294 (-) True G741177
TU842116 other upstream 994248 70151807 ~ 70160838 (-) True LOC110530971

Expression Profile