RNA id: XM_021613508.2


Basic Information

Item Value
RNA id XM_021613508.2
length 8910
RNA type mRNA
GC content 0.48
exon number 15
gene id LOC110530443
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 70056503 ~ 70095135 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TAAGGAGAAGAGCAGAGGTGTCAAGCAGTAGGTGAGAGACAGGGACAATCTCACGACCGGATGTCTGTTAAGTCAGAACTCTGAAGGTGTTTCCACAGGTTACACTGACAGTTACTGGCTGTATTTTTCTGGTTTCACTCTTTATGGATTTTAATTTAGTTAGTTTGATTTtcttcatttttgttgttgataaatTAGCATTTTATTCACATATCCTTCGTTAAATCAGCTTGTCTGTACAGTTGAAGAGGAGCACATAGGGATAAGGCTGGCTGCGTTTTTCAAAAAAGTTGTCCCGTCTGTCACTCGGACGTTGGTCATCAACCTTTCTGTGACCCTTTTTCTGTCTCGATTGGGTGTCCTAACGTGATTCGGTCATGAGTTCAAAGATAGTGAACTCTAACTCATCCCCTGGAAAGCCAAGCACGATGGATAACCTAACTGACTGCACTGGTGCCGGCTTGGACCTCATTCAGAATCGCATTGAGTCTCTGAGCAGTAAGATGGACAGGCTCATCAACATCCAGGAGAAGGTCCTCAATCGGCTGGACGGAATAACCCAGGACATCGATGGTATCGAAAGGGACGTGGAAACTCTGAAGGTGGACAACGAGGAGATCCATATACCTGCAAGAGCCCTAACTCTTCCCCTGGCTCAAACCCAGGGTACAGGTGTGGTGGGCGAGGTGAGAGAGATGTGTCATGAGATGAGCTCCATCATGATGGCGTTGGACCAGCGCTCGGAGAAGCAGGCTGAGAAGCTGGACGGGATGGAGAATCTGGTCCTCAGCATCCAGCAGGTCATCAGATTCATCGGGGAGACGGTGAAGAGCTCCCGGGTTATGGAGATGATGTTTATGCGTCCTGCAGCACACAAGGCCCCCAAGTCCAAAGACAGTAAGGGCAAGGTGGACGTTAAGAGGCAATCGTCTGCAGAAAAGAGCGAGAGCTCAGTTACTAAGAAGACTGACAAGAAAACTACCTCTACTAAAGCCACAAAAGGGACTCAAGGGATGATAACCAGTAAATGTGAACCCAAACCTAGTAGACCGGAGACCACTCACAGTCACAAGACAACAAAGCTCCACGGACCAAAGCATTTTCTCACAATCCGCAAACTCTGCGGAAACTTTTCAAAAGATCACAAGGGGAAGGATGGGAAGGAGAAGTCCAGTCTGAGCACAAAAGGTCTGAAAACACAGAAGAAGAAACCCCCAGATACAGCAGACACCATCTCCCTGAGGAAGCAGGCGTTGCTGCTAAAGGAGGTTCAGAAGCTCAACAGGGAGAATGCAGAGAGATCATCATCAGGTCACCAGCAGCAGCTTACCCCTGATGGCGTCTTGGACCTGGAGGCTGGATCTGGAAGGGCCTCAGAGGGTTTGGGATCATCACAGACTGGGTCCCTCAGCCCGAACCTGCTGGACTTGATCCTCAAGGGCCCCAAGGCCCCCGTGACCGAAGAGGAGTCATTGtctgagaaggagagggaggcagcAGGAGATGGACtaaaagtggaggagaggaaggaggaagaggaggtcatAAAGAAGCAAGAGAAGGAAGACCACCTCAGTGAATTGAAGTTCAAGGAAGACGAGCGAGAGGAAGAGCTGTTGAAAATCACAGAGCAGCCTGAGGAGgttagaggagcagaggagagagaggggaacaaaaAGGAGGAGGACAGTGCAGGCCCATCAGAAGCTGCTGATATGTCAGTTAAggatctccctcctctcccaccctcccctgAAGCTCCAGGAGAGACTGGCTCTATTCCAGAGAGTTGTGAAGTCCACAACAGAAGTGCCTCCTCTCAGTCCCTGGAAGCTGCAGAACAGGACCAGATTGAAGAGTGCAGCACCAGCAGTAAGCGTCGCGTGGCGGAGGAAGACCTGGGAGTGGAGGACCACAAGAAGAGTCGGGTggagggaggagcaggagaggaataTGTGAGGCAGGGGGAGAAGGAGCAgggggagaggcaggaggaggaagaggaaggagaaagaccagaggatgaggatgagggatGGGGCATCTTCAAGGCAGACGGGGTGGATATCCGTGTGGAACTGAAGGAGAGGATGGGAAAAGAGAAGAAGCCTGATCAGTCTACAGAAGTCAGGCACTCTACTGGGGAACAGTTCTTCATTGATAAAAGCTCTCCTCCTCCGGCTCCATTCAACCATCGGATGGTGGCAGCCAAACCGAACCAGATCAGCAACTTCTACACCATCAACAGAGCAGAGGTTCTCGGAGGAGGTCGTTTTGGCCAGGTGCACAAATGCATGGAAAACTCCTCGGGTCTCACCCTGGCTGCCAAGATCATCAAAGCCCGGAGTCAGAAAGAGAAGGAGGTGGTGAAGAATGAGATCACGGTCATGAACCAGCTGGACCACGCCAACCTGATCCAGCTCTACGCCGCCTACGAGTCCAGGAACGACATCATCCTGGTGCTGGAATAtGTGGATGGAGGGGAGCTCTTTGACAGGATCATCGATGAGAACTACACTCTGATGGAGCTGGACACGGTGCTGTTCATCAGGCAGATCTGTGAGGGCCTGCAGCACATGCACAAGATGTACATCCTCCATCTGGACCTCAAGCCAGAGAATATTCTATGTGTGAGCAGAGTCACGAATAAAATTAAGATCATCGACTTTGGACTTGCCAGAAAATACAAGCCCAGAGAGAAGTTACGAATAAATTTCGGCACCCCAGAGTTCCTGGCCCCAGAAGTTGTCAACTACGACTTTGTGTCATTCAACACCGACATGTGGAGCCTGGGAGTGATTACATATATGCTGCTAAGCGGTCTGTGTCCCTTCCTAGGTGACGACGACAATGAGACTTTGAATAACATTCTGGCCTGCCAGTGGAATTTTGAAGAGGCAGAATTTACAGACATCTCAGAGGAGGCCAAAGACTTCATCTCCAAACTCCTCATCATCAATAAAAGCTGGAGGATAGGTGCCTCTGAAGCGTTGAGACATCCTTGGCTCTCTGATGCAGTCCTCCATCACCGTCTTCATGAAAAGAAGAACATGTGTAACCGCTCACGCAGATCTTCATGCGTACCCACCACAGATAGTTGAGCATGATGACTTGACGGAGCCAGCGGTGGCCACTTGGACCAAGCCTGCTGTACACCTGTAGAACTACCAGAGCTTACCTGTATGAACACATTTAAACTGTTAAAACTCCGTAGGTGGAGCAGTGTGTCATGTGTGGTAGTGCAAAACCAAGAGACAGACAAGGCAATTCAGCACTCAAATAGGATTTAttaacagataaaaaaaaataaggcCAATAATCAAAATCAACAGCTGGTCCTTTATGGCAATAACTGAATGTAATCGTATTCTTTCCCAGTGATTTATTTTCTCCCAGGGCAGAGAGAGCTTCAAACCGTCGTCATTGGGTGCTGACTGGTCCAATGGTTAGGCGTGTCctcctcactgctctctctctccctctctgaacgCCACTGCCTCCCCATGTTCTGCCACCCTAATTGCAGCCAGCTGTTCAAGATGTGCAGCTGCAGTCAATTAAGTCTCTGTGGAGAGATGCCACACCTTGTAATGAGTTGTTTATCCACCAAGTGGGGCCAAAATCCGGCCTTTCCCACCCTTACACCCCTCGGATGCTCACACACCACCCATCCCTGCTTCAACTCGTGGTTTGTACAGGCCAATGCCCCGATAAAGTCAACTCTTGACCAGGCATCTAATCCAAGGCCATGGAGGTACACCCCTGGACCTCTAGGGGTCATACAACAAAGGTTGATGTTCATCATCTCCATGGTTCACCCTCTTCATGGGTTTGGTTCTCGGCCACCTTCTGGGGCACACACGATAACTGGTTATTGAGAGGGGGAAGGCTCTCACCTCCATGCGTCTGTGCCTCCTCACCAGCTTTCCCGTTCTCCTTTGAATGACAGCGGCTCGCCTTTTTCCACTTGGGCCTCAGGGTTTCTGCAAAGTCTTGGGTTATTATCACAGAAATgttcagaaatgttttttttttacctcagttTTACTTCAAGCCCCTTTTCTTTCACAGGGCATTTCTTTTGGTCTCCTCCAGCCCTTCTTGGAAAACCATGCTTCTTCAACATTTTCAAAATAGAGCACCCCGACAGCATGCCACCTGCCTCAGCTCTGGTCAAAGAACATTTGAAGGTCCATGCCAGGAGTTTGAGGTTTCTCCATTTCTGAACATCCCTTTTCATTGGTCATACTCACCACCACAGTGCCATCTTGGACCTTTACCTCATGGTAAAGGTGGGGCTCGCTGTCCCCTGGTGGTGTACCTGATGGTAGTTGACCAGTTTCTGTGGAGTTGGGAGACTCTCCCTGAGGCCTCCTGGTAACCAAGAGCTTGGCAAAGTCTTGGGTTACCATATAACCATCATCCATCTTAATGAACTTGCCTGACCATAGTAGGCCCTCTGACTCCCAGGCCCACtctccaacactccaccactcctgGGGAGGCTCAGTAACATAGTTGGTTTGTCAGGCTCACCCATGTCTTGTAGCTCTTCCATTCACATTTGACTGGGTGGATGACTGGCAGAGCTCCACTGCCTCCTTGGCCTCTTCCTGTCTTTAAAGGGGATTCTTCTTCTCTGGCTGTGAATTTTTCCTCTGCGTCGTGTCAGAGGTTTGACCTGAGGGTGAGCCAGTTGCCTCAACCGCCCTGTTGGGTTCTTTGTCTCACTGCCTTCTGTGCAAGTGATCCACCTGCTGGCAGTTCTGTCTTCTGGGTTTTGGAAAGAAGACTCACGTCAACCATGGTTAGACACTTCAGACTTTAAACCTCTTCACTTCTGAATCACAATTCAACCTTCCTTCAGACCTCTTAACTCATGACGAAACTTCACTCACCAGAGTATTGGGCTGCTTCCCTCTTGGCTGGTAGTGCCCTTCTACGGGCTCACCCCAGTTTCCTAACCAGTTTTTGATTTTGGAGCACTGGAACTTCCCTGGTCGCTGCTGAATCCTTTGGACCGCCATCTCCCTGTCACCACTTCACCATCAGGGGACCTTGAAACCTCTTCTGGGGAAAACAAAGTGGGAGAGTCATCAGTGGAATGTATTTGGACTGACATTCTTGTTGGTGTGGTTGTCCTGGGAACCCTCTGTGTAACCATGCTCTGGTCCAGGTTTTCTTTTTCGCGATTCCTTTAATCTTCTCTGGCCATGGGTTCTGGACATACAGGCTGTTTTCTCTTCGGTCAGGGGGCTGTTCAGTGGTGTGGGTAAACAACTCACACGAAGGAGCAAACATGTCCCCTGAAATGGAGAGTGGGATTTGATCCCACCAGAGCTCCGTCTCCCCTCTAAGTCCAGGACTTGCCTCAGCAGATGGCTGTGTTGATGCTTTTCACGCAGTTGCACCTCAAGGCTACTTAGCCTCTCCTGCTCATTTTTGAGCAACAAGAAGATCTGCTCCCACTTGGCCCTCGAGGCCATATTATATGTCTCCAGCCTGTGAACGACATCCTGCATTTACTGAACCTCATTACGTTTTCCACTTATGATTGCAATTCAGAGGCTTTTCCTGTCAGGGACATCTTCTCCTCCATCAATTCCACCACTCTCTGCTTGGCTTCCATTGCTGACTTCTTTGCCATCTCTTCATTCCTTTTCAATTCACTTATGAGGCTCTTCACTGCCTCCTGCTCAAGCCTTCTTGCTGCCTGCTCCTCTTCCAGACAGGCCTGCACATTGTTCCTCTTCATTGCTTCTCAATTACCTGGGCAGTTCCTGCTCGGTCTGCTTGCTCTTACTGCTTGTCCAGCACCTTTGTGGAAACCCCTGTTCGTTTTGAACTGGGGTGCAGCTTTTCTTCCAACAGGGCCAACATCCCAGCCTGGGCTTCCCCTTGTAGCTCTGCCCTCTGCCGGCAGATCTCTAAATTCTGGGTGCTGGCTACCTGCTCCCTATGCTCCTTTTCTGCACACTCGTGAGCTACCTCAGAGACCTCCAGGACCCTCTTCAGCTGCAGCTTTCCTGCCTCTAATTCTTCTCACCTGAGCTTTTCCTCTGAGCCGAGCATTACTTTTCATGAGCTTTTCAGATTGCTCATTGGCAGCGTGAACTACCTCTTTAAGATAAATGTTCACGATTCAGAACAGGCCTCTTCTTCCAAAGTCACTACAACATCCTGGAACTTAGTCTTTACATTCTCACCTCTTCCCCTTGGTCCTTGCACTTCTCCTGCAGGCTGAGGACCATACTTGATTCTCTTTCAGTTGACTTTTCAGCCAGGTTACCCTCTTCCTGTTGCTGAAAGTCTCCTCTTGCAAGGTGGCCAGCTGCCTTGACTTCTCATGGAGCCGTTTGAGGCCATGACGCTCTTCTTGTAGGACGGCGCACAGGCACCCCAGACGCTCCTTCAGGGCCTCTTTGCTGGTCTTCTCTTCTTCAAACTGCTTCTTGAAGGCTTCCTTGGCCTGGTCAGCATCTAGTAGGTAGGCCCTCGTGCCCTTGCTGCCCCTGGGTGTCTGCTAACAGGCATCTGCTCACTTCTTCCTTTGCCTTCCCCCTTGAAGTATCTGCTGGCACTTCTTTGTTACAGCCACAGGTGGCGGTACTTACTGTTCAGTCTTCTATTTTTACATTTTTCATGTCACTGATAGCTGCAGTGATTTCTGGATCCACAAGGAGCCCCTTTATtaaactacgcaagtcagttaagaacaaattcttatttacaatgactgcctaccccggccaaacccagacgatgctgggccaattgtgtaccgctctttgggactcccaatcatgagcggatgtgatacagcctggattcgaaccagggactctagtgatgcctcttgcattgagatgcagtgccttagaacgctgcgccacccgggagcccAGAGTTATTTATGGCCTGTGAGAAACTCAAGACTACCTTCAGAGCTCTTCAGTGCTCCCTTATGTGtggtgcttagtcccctccgtCGCCAACCACCTCATGGTTGAGGGACTTGACATCCATTCTTCTGCCAGCAGCATTTTCTCTTGTAAAAACCGACTTAAAAAACCCTGTCCTCACAGCCTACAGGGCACCATAACTTGTCTAAATGGTTGTCTCAGGTTTCACTACCACACGGGGACACTTACATTCTACACCAGTGTAACAACTCAGACAGACAAGGCAATTCAGCACTCAAAGAggatttattaaataaataaagggtTCACAGGTAGCTTGGGGAATCTTCATGTCCCAAAAGAATGTTCTCACAAAGAAATGAGGCCAATAATCAAAATCAACAACTGGCCCTTATGTCAGCAACTGAACATAAACGTAAGTCACTGGGGAAGATAATATTTTACCCCAGGGCAGAGAGAACTTCAAACCTTCGGCATTGGGTGCAAACTGGTCCAATATTTGCGATAAAACTTTGGTGTGTCCTCCTCacggctttctctctccctctctgaaatCCACTGCCTCCCCATGTTCTGCCGCCCTAATTGCAGCCAGCTGTACAAGATGTGCAGCTGCAGTCAATTAAGTCTCTGTGGAGAGATTCCACACCTTGTAATGGGTTGTTTAGCCACCAGATGGGGCCTAAAGCCGGCTTTTCTCACCCCTACACCCCTCAGATGCTCACAAAACCTACACCTATTGAACTACACCTGTAGAACTACCAGAGCTGTGTGATGAATGGACAATACATGTTATCTTACTTTTACAAAGTAAAAGTACTATTCCCACAGTTTAGTGTGAAAGCGTAGAGCCCTTGAAGACTGGAAGGTGTAGTAAAAGATATTTAGCTGGATATGTGAATGTAATCTACAATGCAAGACAGTATAACAGAACACCAACACCTAACTGCCCTGATCTTGTGAATACTTTGGGGATTTTGTCAGACAAACTAGCTGAACTTTTATCCGAAGTGTGTTTGTTTCCCTGCTCACACAGTTTTACTGCTCTCTTCCTTCATGTGTGAATTAAATTTTGATTCACACATCAGTTATCCACAATGCACCTCACAATATATGCTTCGATGTGACTCTGATCTCTTTTTAATTTAATTTCCTGCTAATGTAAAAGGGTTCCATGTTGAGTACTGTACCCCACTTTTCCTCTGAATGTGAGTGTATTCATGCAAACCGAGGGATTTTCCTGTTTAATTTGACTGATAGATAGACCAATGTCAtatgtttgttgtttgttttttgttctcGTGACATTTGGCGTAAATAGATAAAATATGCAGATGTGTGCTTAAACCCTTTAATGCGGATCTGGAGTACTTAACACTTTTTCGGTGGCATTAGTCTGGGAAGGCATTGTTATCCTGTTTTCATTTTCTTAAAATAATTTGATCTGTTGTTTTAATTGCTGTTGATATATTCTAGATTGTATTTTTGGAAAAGCTGTGCTTTCTCTAAGGAAAGAGTTGTACAAATGGAAATGGTTGTGAACAATGTTTTGTAACAAGATGATTGGCAAAGTAAAAAAATGCCTCCCAGAATCAGGGTCTGCATCTAAGGGTTAAGTTCCAGAGACAGCTCGTTATGATTTcacaattcacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacattcataaacAAACAATTGGTGTGGTCTGTTTTCAAGCTCTAGTATGCCCACtttatattgttatttatttaaatcAGATGAATTCACCAAACTAATCATAGCATTGAAGGAAAAATACCTTGTTAGAAGTGACATGTTTCTATGTCTGTAGTCATGTCCTACATTATACTTGTTCATGTGTgtataaaaaacaaacatttttactGTAAATTAAAATAATCCAAGTCTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU841751 lncRNA downstream 6529 70049743 ~ 70049974 (-) True G741420
TU841749 lncRNA downstream 7911 70048335 ~ 70048592 (-) True G741418
TU841737 lncRNA downstream 15220 70041052 ~ 70041283 (-) True G741406
TU841731 lncRNA downstream 22068 70034207 ~ 70034435 (-) True G741400
TU841724 lncRNA downstream 30388 70025521 ~ 70026115 (-) True G741393
TU842114 lncRNA upstream 87723 70164116 ~ 70165084 (-) False LOC110530448
TU842115 lncRNA upstream 94563 70170956 ~ 70172928 (-) True LOC110530448
TU842189 lncRNA upstream 98312 70174705 ~ 70175175 (-) True G741829
TU842190 lncRNA upstream 100674 70177067 ~ 70177672 (-) True G741830
TU842191 lncRNA upstream 101573 70177966 ~ 70178170 (-) True G741831
XM_021613499.2 mRNA downstream 502813 69537168 ~ 69553690 (-) False LOC110530438
XM_036986068.1 mRNA downstream 502813 69537253 ~ 69553690 (-) True LOC110530438
XM_021613495.2 mRNA downstream 569369 69477306 ~ 69487134 (-) True LOC110530436
XM_036986849.1 mRNA downstream 582114 69461920 ~ 69474389 (-) True LOC118965618
XM_021613494.2 mRNA downstream 606080 69434542 ~ 69450423 (-) True si:ch73-40a17.3
XM_036986070.1 mRNA upstream 72455 70148848 ~ 70160827 (-) False LOC110530971
XM_036986071.1 mRNA upstream 87621 70164014 ~ 70173178 (-) False LOC110530448
XM_021613517.2 mRNA upstream 110076 70186469 ~ 70198565 (-) True gpaa1
LOC110530449 mRNA upstream 122494 70198887 ~ 70200270 (-) False LOC110530449
XM_021611224.2 mRNA upstream 124476 70200869 ~ 70211111 (-) False LOC100136597
TU841504 other downstream 273209 69782289 ~ 69783294 (-) True G741177
TU841404 other downstream 329072 69725774 ~ 69727431 (-) True G741077
TU841403 other downstream 329124 69725774 ~ 69727379 (-) False G741077
TU841006 other downstream 625850 69408968 ~ 69430653 (-) False G740718
TU840819 other downstream 898777 69150343 ~ 69157726 (-) True igfbp1
TU842116 other upstream 75414 70151807 ~ 70160838 (-) True LOC110530971
TU842204 other upstream 122518 70198911 ~ 70200278 (-) True LOC110530449
TU842419 other upstream 442994 70519387 ~ 70525951 (-) False G742038
TU842800 other upstream 758965 70835358 ~ 70842457 (-) True G742383
TU843586 other upstream 994241 71070634 ~ 71071082 (-) True G743076

Expression Profile