RNA id: TCONS_00035381


Basic Information

Item Value
RNA id TCONS_00035381
length 6949
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id XLOC_017933
representative False

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 10347783 ~ 10422813 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTCATTCCCCACTTCTGCCCGTTGGCTGAGGACAGTGATGCCTCGATGGCTAAATGTGTGCCCATAAGGACGATGGAAGCAGCGGGAGGGGGCCGGAAGCTTGTTCAGCACTGCTGTGAATGAAAATGGCACTTCAGTGTAGATAATGCCATGTAGTTCACTGCACACTGATTCATTTGCTCTAGCCAGAGGATTCCTTCTCTCACAGGCACAAGCTGATGGCTCACATAAGATCCCGGTGATGACAGGAGCCTTCATGGACTCGTCGCCTCACGATGACTACAGCACGGATCACTCTCTCTTCAACTCCTCCGCAAGTGTCCACGCCGCCGCTCTGGCTGCTCACAGCCAGCAGGAGGAGCAGCAGCCCTTGTCCCGGGACGCCATTTGGCTGTGGATCGCTATTACTGCCACCATCGGCAACATCGTAGTGGTCGGAGTTGTCTACGCCTTTACGTTCTGATCTGTGCAAATGAAATGAACTTTGGAGGCTTCATATTTGAGTCTCCCAAAATAAGGAACTCGAGGGCCTCATTAAACGAACACTGCGCATTtttttacgaaaaaaaaaaaaaaaatgtgcgcaGTCTTAGttgttaatttgttcattttattaacACAGAAGGGTATTTAGAAactatattttgattaattgaTGTTTTCATGATGGTAACTTTTTAACTAGATTGTTTATTGCTAaacgaaaaaaaaacaacaacacatctCTTGTTTTCAGACTATAGTGACTTATACTGCCAAACAATTTGTACGTGTTTTGCTTTTAGTATGTGATATCGATGATGTTGTAAAGCTTTAAATCTCTAGAGGGCAAATGCTGGTCTCTGAAAGTCATCCAACTACCTTTATAGAGCGGCGATTAGGAAGTTGAAATGAATCCTGAATCTAATTTGGTTAAGTAACCATAAAATAAAGTTCATCAGTATGTAAGTGCAGAGAACAAGACACTTTATCAGAAACATATAGCTAGCTAAGCACTTATAATTGTATTAAATCATGGGGCATTTCTTTATTAAATCAtggttgatttgtttatttatttacatattgccCCAATACACATCAATTTGAAGACAATCTCTTATAATTCTCCACAGTGGAGCTTAATAACCCTGGGTCACTCTAACCCCTGTAACCTCTAAACTGAATCTTTAGGTTTTATAATGATTATAGTTTACTTGGGGTCAACAATGAATCCTGGGTATACTTACAATGACGTTTCACATTGTACATACAGCATACAACCCTGGGTTAACatctttatttgcatatttgctgTGTCAGTGTCACTCATTGGACAGACACGTCATGCAACCAGAAACATAGTATATTATATATTGCCAACTGCAGTTAGCATTATAATAGACTATAATGGTAAAAATGAGACAGCCTCTTCCTTATTTCATTTAGTGTATGAAAGCCAGTACAAACACTAAATGACTGTGTACTgatccagcaggcacaggacgtcaacatgacattgtaccccaacgccatgtgacgttgcattttgtttagaaaatgAAAATCGTGTTGCATCAGAACCCATCGTCAGgtcaatgtccaacgtcggaCAGACTTTGCATTTTGCTTACTTTTTAATGCAAccttagaacaacaaaatatcgACGTCTATCGATGTTACAGCTGGATGTTGTATGGAAATTACCAgtttgacatctatcagacgttgaattttggttgacATACTTGATGAATAAGCATCAGTATTTGACTTCAAAaagacattggtttaagatgttgacttgaCGTTGAATTTTGATCACTTTACAAAACAActcaaaatcaacaaaatatcgaCGTCATTttacgtcgttattggacatcaaaataacgttgtccttagacactggcgaTCTAAATCTAACTtgatattaacatcttatgatgttgtgtctGTTGGGATTGGCTGCCAGTAAGCATTTGCTGTAGTATTTGTTCAAGTCATCCTGAGGAGTTTGTATTTACAAGTTGGTAATAGTTGGTAAGTCAAGTCACTTTGGTCAGattcagcactttttttttttttagatgaccAATAAAATATGTGCAGACTAGCCAAAATGACTGTGATATTTTCTAAATGTTGGTAAAATGAGCTTTCTGTTTACCACATTGTGCAACAAAAGCATAAAAACAATAACGCTAATTCATTCCAGTAGTCAAGATTATGGATTCCAGTAGGCTTCTAAATATTGCTGCAATCAAAGGAGACTTATGCATCTTTTCAAAATATTAATGGCAAGGTAAGCCTCATATGAGCTGTTTCTGGGAGGTTATAGTAGATTAGTAACTGTGGATTCATTATTTGTGGATgaatagaatttttatttatttatttattcattttaagatgTGAAAGTCAGTAGTGCCTGCTGAATCATGACCAAGAGAGAGAGAAGTTTTCCAGCCATATCTTTAAAGACTGAtcattgattatatatatatatatgaatgcattgcatctattgtctttttattatatcttcactgtaaaaacaaaGTGATTAGTTGACCATTTAAAAAATACTGAGTAAATCATTGCTCATTTATTAGTTTTCTTTTcgactttgtccctttattaatctgggttcgcgacagcagaatgaacaaccaacttatccagcacatgttttaagcagcggcaTAAGCAACATgccagctccacacagaaacgccaattgacccaaccgaggctcgaaccagcaaccttcttgctgtgaggcgacagcgctactcaCTGTGTCGCCTATAAATCATTGCTTTAAAATTATCTAACTATTCACATAAGTCTACAAATTAAGTTGTCGACTCAatagttccaagttacaatgggtttactttttaaagtaaagtcagctTACCATTtataaggcaacaggtttactcattcTTTTTGAAAAACTAAAgaaactaatcgctttttacagagTGATTTTCTATGATTTATTTAGTTGCTgtgaaatgatttatttaaaactgccaaaaattATCTAATATTTTTAGATGCACCATATATAATATTTGGAAACTTAGCATGTATCGTCACTTTAGGTttctaaggttctatctgaaattatttgtcaaaattgagttattgaaatattcttactaaatgacaacttatttacattatgggatgtgatattgtttagatattaagactttatttaaaaaacaaatgttacacacatactgtttgctatagaatgcaaaaacttctcaacatctcaaaatcatttagaatgcagatagaaccttataattccaaggtgacaatatgtaaataacaaaaataacagtaaTATAATCATAAATGCTGATGCTTCATCTATTGCATCTGTCATGTTTTCTCACAGTCACATACACCATTCTGAAATTTAGGGGTTGAAGAAAATCCAACGAGTTTGTTTTCCACTGAACTTCATATGTGTTAACTCGTAAATATGACACTTCCAACTTGACTTGAAGGCATACAATCTAATAGTGTCACCTATTGACTGGCAGCACATTTTATAACCCAGGTTAATAAGCAGTGCTAATCCCACATATTCAATACATTCCTTTACCCAGGGTTAAAATTGATGTTTAGGCCAACAGTGACCCAGGGTTAAGTGCAACATGAAAAGCCCTATTGTACAATCACCCATTTTAATTTAAGTTTGAGTTAAAAATTCATcacacgtttaaaaaaaaaaaaaaaaagccataagTGATTTCATAAAGATAAATCTTCCCTCTCCCTCGGTCGAGGAAGTGCAGCTTGTTTTTGGTGGAGGTCAAGGCTTTGCTTTTAATGAGCTCAGCATAAAAGGTGGGGGTTGCTATGACGACTGTTTCATGCTGTCTGGGAGGCTGCATTTCTTATTCCACCATCAGACACATCTTTACTGCCTTCCAGCTCAAAGTAACTGTCCAAACAGAGATGAACTTGAGATTAATTTAAGTAGCAATTTCCTAATGattattaagtgtattttttgtttgtttttagagtgTTCCAAAGCCTTAATGTACAAATTACTGGACCAATAATATCTACTAAAAAAAGTAAATCTAAAAACAATTCACcctaatttactcaccctaatgTGTCTCCCCATTTACAAACTGTTCAAAAGTCTATTACTTCAAAACATtcttaaatgaaagaaaataaactcaTGTGAGTCATGTACTTTTAGTTCAAGTCTTCTGAAGAGGCATAACTGCTTTTTATGATGAACAGGTTTAGGGCTTTTTTAACtacaaacatttgagtttacaaaaTTCAGGGCGCATCTCAAATCATCCCCCCTTTTCcaccaaggctcattctgattatgtacccctatatacatttctggagagagcaaaatatgtcccacaagctatgttttttgcagttttatttttcGTGAATCCACCTGAGCCCGctgagtatgctttttcagatgtcaAGTTTCTCTTGTGAGTCCCATTTGAGCCTGCTgctctcacgtaaatccaccagaggccgctgttgactgactgaccaaccaactgaTTCCCTCCACCcgcccctttccctaaacccaaccaatagggaTTTacaaagcacagattgacccacccacccacttccctaaactcaaccgcagtgttttaaaaagcaattcagaaaaagaaaagcccttacgGCAGCCTGattgtttaaacacattttcagttttgacCAAagtctcaccctgttatttacttgtttatttaatttattggctTCTGAAATTGTTCTTTACTGGACTCTAACACCGTTGTCCTTGTCAACTctgctctgtgtctcaagtccaccagcgagctactggacaaactggtatcaGTAGAAAAGCgttccatatggaggtaagccgTCAGCTGGCTAGCGAGAAAGGAAACGTTCTCATACCAATACCatcccatagcattcattttaaagatgaaatgcagtcattaatagctctggctacataatttgcgatctcgaGAAACATATATAGGGATATAATCACCATAAAATTATTCCAACACACTGAAACTAACTCTACCTGAAACTAATCGTACAATACACTGTGAATATCAGGTAGCGTTGATGCTCATTACGTTCATTTAAAGGAATTCTACACAGATAAACATCATATAAACCACCTCACCAAACATAATGACAAAAGAGAGACTTCCATAAACaatatttatgtttaattcataaacaattcattcatgttgtcccaacacaaattgattaggttaacacttaatattttaataaatttacgtggattattattattatttttttaattaagcgaaacaaaatatatgttttagtGTGCTTGGAAGATGAACTAATGTCTAAtgggtttgaaatgacatgagggtgagtaaatgaagcaagCTAATGACATAGTTTTTAACCCTTTAAAGTTTTCTAATTGCTGGACTGACCAATTGACCAACATGATTTTTCATGGGAAGCTAGTTGACTGATTTACCTTAAGCTAGCAGACCAATGGACATCTCAACATCCTACATtgctattttaatacatttttgcgtAACTGCAATTGTTTCATGAGGCTAAGGCCTTTTCACATCAAGAACgataactgtaactttaaacttCGTAACTGTAAATTCTAAAAGTTGTTATTCTTCAAgtattttacttgtttttctCTTATTTTGCCAACAGGGCTTGCGTAAATTTGTGTACGATACCCAAAATTATAAAATTAGACAATCAGAATCCATCCTGCTTTAGATCTTACGCATTTAAAGAGGCAGACGAAATAATAAGATATGCACTGCGTTATAATTATTGTATCAGGTGTTGGTTTGAACACATATTATCACTGTTACATTTATCATTCATGAAGTGAATAAGCCTAAATTCTTCAGAAGTATCTTTGACCAACAaaactatgtatttatttacattctaAACCTGTCAGCGTTTTCACTGTAAACCTTGAAGGACAATTTCTAATTGAGTCATGATCGACCGGACAGTTTTTAGACTGTGACGGTCACTCTATTGATCAGATCAACAGACTTTGAACCTGCTCTATTAAGCTGACCAAAATGAACATGTTATAGCTACGGGCTAATGGGATGAAATGAACTGGGACCAAGCCAAGATGATCGTCTATCATCTTCTCTGCAATGGATTGCACTGAACATAAAAAAGGGCCTTCATTTAATCAATGACTTTGATTTATGGACTGGAAGGTCTCTCATCAGTGTGTGAAAAAATATTCACAGATAAACTGTAACTGCCACAGTGAAGTTTGATTAAAAGTTGATTGTTAATTATGGCATACTATATGGTCTAATTGAAGAGAATATTGAAATGCCCTTCAAAATCTCTTTTCTATTATGAGAATAAACTGCAATTCGCTGCTACTGTTTGTTGTTCCTAATAGAGGAACATGTGTTATTTAAAGCAGCTCGATTTGTAATCCCCCACAGTAACGCTTCATTAGAAATGAGGTGCAAATGAACAAATAATCTTCTCCTCAGCAAACAGATATTGTAGATATTGAGATTCCTAGTAAAAGTCCTGTCTGTTGATGTTGAGAGGTCTTTATATTGAGGCCTGATATCTAGCGTAGCGAATGAACAGCGGCGTGCTCAGCGAGTTCCGCTTCACCTGCACTGCTACATGTTTCTTTTTGTATTGATAAATCACTGTTGAATTAAACAAGTCATTGAACACTAGACGTGAGGCTGTCATGATATACTTGTGATAACATTTCTACTCATCTTTTTTCTGCTGATGAAATAAAGGCTTGTCACTTAACTCAATGTTATAGTATCTTAGTTTGAGTGATCTGAACCATATTTTAACCATACTGCATCacaaatgcactgaaaaaaaattattcaaagttgATTCCTTggattaactctttttttt

Function

GO:

id name namespace
GO:0050877 nervous system process biological_process
GO:0048488 synaptic vesicle endocytosis biological_process
GO:0009581 detection of external stimulus biological_process
GO:0009582 detection of abiotic stimulus biological_process
GO:0009583 detection of light stimulus biological_process
GO:0009584 detection of visible light biological_process
GO:0009314 response to radiation biological_process
GO:0007268 chemical synaptic transmission biological_process
GO:0001505 regulation of neurotransmitter levels biological_process
GO:0050953 sensory perception of light stimulus biological_process
GO:0009628 response to abiotic stimulus biological_process
GO:0098916 anterograde trans-synaptic signaling biological_process
GO:0002088 lens development in camera-type eye biological_process
GO:0104004 cellular response to environmental stimulus biological_process
GO:0007600 sensory perception biological_process
GO:0007601 visual perception biological_process
GO:0007602 phototransduction biological_process
GO:0009416 response to light stimulus biological_process
GO:0099536 synaptic signaling biological_process
GO:0099537 trans-synaptic signaling biological_process
GO:0036465 synaptic vesicle recycling biological_process
GO:0009449 gamma-aminobutyric acid biosynthetic process biological_process
GO:0003008 system process biological_process
GO:0051606 detection of stimulus biological_process
GO:0071214 cellular response to abiotic stimulus biological_process
GO:0018298 protein-chromophore linkage biological_process
GO:0071478 cellular response to radiation biological_process
GO:0071482 cellular response to light stimulus biological_process
GO:0140238 presynaptic endocytosis biological_process
GO:0006836 neurotransmitter transport biological_process
GO:0031226 intrinsic component of plasma membrane cellular_component
GO:0030672 synaptic vesicle membrane cellular_component
GO:0031234 extrinsic component of cytoplasmic side of plasma membrane cellular_component
GO:0030133 transport vesicle cellular_component
GO:0042995 cell projection cellular_component
GO:0030141 secretory granule cellular_component
GO:0001750 photoreceptor outer segment cellular_component
GO:0043005 neuron projection cellular_component
GO:0044441 obsolete ciliary part cellular_component
GO:0044456 obsolete synapse part cellular_component
GO:0044459 obsolete plasma membrane part cellular_component
GO:0044463 obsolete cell projection part cellular_component
GO:0005834 heterotrimeric G-protein complex cellular_component
GO:0120025 plasma membrane bounded cell projection cellular_component
GO:0120038 obsolete plasma membrane bounded cell projection part cellular_component
GO:0045202 synapse cellular_component
GO:0005886 plasma membrane cellular_component
GO:0005887 integral component of plasma membrane cellular_component
GO:0012506 vesicle membrane cellular_component
GO:1905360 GTPase complex cellular_component
GO:0099501 exocytic vesicle membrane cellular_component
GO:0099503 secretory vesicle cellular_component
GO:0071944 cell periphery cellular_component
GO:0097708 intracellular vesicle cellular_component
GO:0097458 obsolete neuron part cellular_component
GO:0070382 exocytic vesicle cellular_component
GO:0097730 non-motile cilium cellular_component
GO:0005929 cilium cellular_component
GO:0097731 9+0 non-motile cilium cellular_component
GO:0097733 photoreceptor cell cilium cellular_component
GO:0031410 cytoplasmic vesicle cellular_component
GO:0008021 synaptic vesicle cellular_component
GO:0001917 photoreceptor inner segment cellular_component
GO:0098793 presynapse cellular_component
GO:0030658 transport vesicle membrane cellular_component
GO:0030659 cytoplasmic vesicle membrane cellular_component
GO:0005416 amino acid molecular_function
GO:0015185 gamma-aminobutyric acid transmembrane transporter activity molecular_function
GO:0009881 photoreceptor activity molecular_function
GO:0015294 solute molecular_function
GO:0019905 syntaxin binding molecular_function
GO:0004351 glutamate decarboxylase activity molecular_function
GO:0015355 secondary active monocarboxylate transmembrane transporter activity molecular_function
GO:0140161 monocarboxylate molecular_function
GO:0008020 G protein-coupled photoreceptor activity molecular_function
GO:0005283 amino acid molecular_function
GO:0008028 monocarboxylic acid transmembrane transporter activity molecular_function
GO:0008324 cation transmembrane transporter activity molecular_function
GO:0005328 neurotransmitter molecular_function
GO:0005332 gamma-aminobutyric acid molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00035378 lncRNA downstream 229786 10114028 ~ 10117997 (-) True XLOC_017931
TCONS_00036798 lncRNA downstream 269568 10077157 ~ 10078215 (-) True XLOC_017930
TCONS_00035348 lncRNA downstream 1512689 8794502 ~ 8835094 (-) True XLOC_017914
TCONS_00035342 lncRNA downstream 2026469 8122693 ~ 8321314 (-) False XLOC_017913
TCONS_00036797 lncRNA downstream 2394601 7951782 ~ 7953182 (-) True XLOC_017909
TCONS_00036799 lncRNA upstream 580282 10979458 ~ 10992289 (-) True XLOC_017935
TCONS_00036800 lncRNA upstream 612021 11011197 ~ 11012011 (-) False XLOC_017936
TCONS_00036801 lncRNA upstream 612021 11011197 ~ 11013583 (-) False XLOC_017936
TCONS_00036802 lncRNA upstream 612021 11011197 ~ 11013590 (-) False XLOC_017936
TCONS_00036803 lncRNA upstream 612021 11011197 ~ 11016920 (-) False XLOC_017936
TCONS_00035379 mRNA downstream 59627 10287061 ~ 10288156 (-) True XLOC_017932
TCONS_00035377 mRNA downstream 227341 10099109 ~ 10120442 (-) False XLOC_017931
TCONS_00035376 mRNA downstream 228965 10098590 ~ 10118818 (-) False XLOC_017931
TCONS_00035375 mRNA downstream 282653 10057750 ~ 10065130 (-) True XLOC_017929
TCONS_00035373 mRNA downstream 367465 9970786 ~ 9980318 (-) True XLOC_017927
TCONS_00035382 mRNA upstream 84839 10484015 ~ 10487951 (-) True XLOC_017934
TCONS_00035383 mRNA upstream 699063 11098239 ~ 11178022 (-) True XLOC_017937
TCONS_00035386 mRNA upstream 2166925 12566101 ~ 12642685 (-) True XLOC_017942
TCONS_00035388 mRNA upstream 2536920 12936096 ~ 12936861 (-) True XLOC_017950
TCONS_00035390 mRNA upstream 2621313 13020489 ~ 13140309 (-) False XLOC_017951
TCONS_00035374 other downstream 294082 10053405 ~ 10053701 (-) True XLOC_017928
TCONS_00035371 other downstream 441399 9906268 ~ 9906384 (-) True XLOC_017925
TCONS_00035370 other downstream 566916 9777179 ~ 9780867 (-) True XLOC_017924
TCONS_00035367 other downstream 587359 9752531 ~ 9760424 (-) False XLOC_017923
TCONS_00035364 other downstream 696721 9644065 ~ 9651062 (-) True XLOC_017922
TCONS_00035387 other upstream 2206542 12605718 ~ 12607421 (-) True XLOC_017943
TCONS_00035389 other upstream 2621313 13020489 ~ 13140227 (-) False XLOC_017951
TCONS_00035393 other upstream 2804890 13204066 ~ 13208752 (-) True XLOC_017952
TCONS_00035395 other upstream 2970051 13369227 ~ 13369343 (-) True XLOC_017955
TCONS_00035409 other upstream 3419219 13818395 ~ 13818510 (-) True XLOC_017960

Expression Profile

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