RNA id: TCONS_00035389


Basic Information

Item Value
RNA id TCONS_00035389
length 2248
RNA type nonsense_mediated_decay
GC content 0.48
exon number 15
gene id XLOC_017951
representative False

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 13020489 ~ 13142357 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

gtTAAATCCGAGAGCAGTCTATCGGGTTACATTTTTTGCAGTCTAATAATAAACAATGTCGCTTTCAGCAGCGCGTTCGTTTCTTTCGGAGGCGGCATACGGCGAGCAGGAGCTGGACGCCAATTCAGCGCTGATGGAGCTCGATAAAGGTTTACGGTCTTGTAAACTGGGCGAGCAGTGTGAAGCCGTGGTCCTTTTTCCCAAACTCTTCCAGAAATACCCGTTCCCCATCCTCATCAACTCTGCCTTCCTGAAGCTGGCAGATATCTTCAGACTTGGCAACAATTTCCTGCGGCTGTGTGTGCTGAAGGTCACGCAGCTGAGTGAAAAACACTTGGAGAAGATCCTGAATGTGGATGAGTTTGTCAAAAGAGTGTTTTCTGTCATCCACAGCAATGACCCTGTGGCCCGAGCAATCACCCTCAGAATGCTGGGAAGTTTAGCTTCCATCATTCCAGAGAGAAAGAACGCTCACCACAGCATCCGCCAAAGCCTGGACTCTCATGATAATGTTGAAGTAGAAGCTGCTATTTTTGCAGCCGCTAGCTTCTCATCACACTCCAAAGATTTTGCAGCAGGAATTTGCAACAAGATTAGTGAGATGATTCAAGGACTTCAGAGAAACAGCAGGAGCTTCTGgtGTCTTTGGCAACTGTGTTATTTGTGGCCAGTCAGGCGTCTCTCTCAGCTGAGGTGAAGGCTGTGATCAGACAACAGTTGGAGAATGTGGCCAATGGCTGGACCGTGTACCAAATTGCCAGACAAGCGTCCCGCATGGGCTGCCATGATTTTTCCAGGGAGTTGTACCAGAGTCTTCGCACCCGTGTGGCCTCCGAACACTTTTACTTCTGGCTTAACAGTCTGATGGAGTTTTCCCAAGCGGAGCAGTGCCTTAGTGGCCTGGAAGATGGAGACTACAGTGCAGCCATGAGCGCCATCTCTGAAGCACTGAAATCCTACCAGAAGGGAATCGCATCTCTCACGGCTGCCAGTACGCCGCTCAGTCCGCTGACATTCCAATGTGAGTTTGTGAAGCTGCGTATAGACACTCTTCAGGCTCTGTCTCAGCTCATTTGCACCTGCAACAGTCTGAAGACCAGTCCTCCTCCTGCCATCGCAACCACGATCGCTCTGTCCTCGGGCAGTGACTTGCAGCGCTGCGGACGAATCTCCACACAGATGAAGTTTTCCATGGATGAGTTTAGAAGTCTCGCAGCTCGCTATGCTGACCTGTACCAGTCTTCGTTTGATGCGGACTATGCCACCCTTCGCAATGTTGAACTACAACAGCAGAGTTGCTTACTCGTATCTTATGTTATCGAAGCTTTAATAATCGATCCACAAACAGCCAGTTTCCAGGAGTTTGGCACTCATGGATCAATTCTGGCAGAGAGCGAGTATGAGCTGAGAATGATGGCTGTGTTCAATCATGTCCTGGAGGAAGTGGAAAATCTAAGCAGGAAACACCCTCCTGTTTCTTACCTGCACACCGGCTGTCTGTGTGATACTGTCATAGCCATCCTGAAAATACCACTGTCGTTCCAGAGATATTTCTTTCAGAAGCTTCAGTCCACCAGCATTAAActTGCTCTCTCTCCATCTCCCCGCACACCCAATGAGCCGATCCCAGTGCAGAACAACCAGCAGCTGACCTTAAAAGTGGAGGGTGTTATTCAGCACGGCTCCAGTCCGGGACTCTTCCGGAAGATTCAGGCAGTCTGTCTTAAAGTCAGCTCGACGTTACAGACAAAACCAGGATCAGACTTCAAGATTCCTCTGGAATCCAAAACCAACGAGATTGAACAGAAAGTAGAGCCTCATAACGATTACTTCAGCACACAGTTCCTGCTCAACTTCTCCATCCTGGGCACACACCAGGTATCTGTTGAAGCCTCAGTGGTGGACACCAGTGGGATTGAATGGAAGACCGGCCCTAAAAACACTGTTTCGGTGAAGTCTCTGGAAGACCCATATTCCCAGCAGCTTCGGCATCAattacagcagcagcagcagaacgTCCCGCAGCCTGCAGCCCAGAGGAACATCAGCACACGCTTCCAATAAAAACACAACCAATACATACTGCAGCATAATAATGTTCTGTGGTGCTCTCCTCATGGACTTTTGTTTGGAAGCAGCATTAGGGTTCATTTGGTCACTGTGTAATAATAAATACGTAtactttttctttgttttctgcAGCTGACAAATGATCGGCCTgcatttgtaataaaataactcaTTTACA

Function

GO:

id name namespace
GO:0034472 snRNA 3'-end processing biological_process
GO:0006974 cellular response to DNA damage stimulus biological_process
GO:0007275 multicellular organism development biological_process
GO:0016180 snRNA processing biological_process
GO:0002088 lens development in camera-type eye biological_process
GO:0032039 integrator complex cellular_component
GO:0005634 nucleus cellular_component
GO:0005694 chromosome cellular_component

KEGG:

id description
ko03041 Spliceosome

ZFIN:

id description
ZDB-GENE-021220-6 Acts upstream of or within lens development in camera-type eye. Predicted to be located in chromosome and nucleus. Predicted to be part of integrator complex. Orthologous to human INTS7 (integrator complex subunit 7).

Ensembl:

ensembl_id ENSDART00000124470

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00036457 lncRNA downstream 92534 12927182 ~ 12927955 (-) True XLOC_017949
TCONS_00036456 lncRNA downstream 163443 12854967 ~ 12857046 (-) True XLOC_017948
TCONS_00036455 lncRNA downstream 164054 12854967 ~ 12856435 (-) False XLOC_017948
TCONS_00036454 lncRNA downstream 165684 12853911 ~ 12854805 (-) False XLOC_017947
TCONS_00036453 lncRNA downstream 165684 12853911 ~ 12854805 (-) True XLOC_017947
TCONS_00036808 lncRNA upstream 169055 13309282 ~ 13312947 (-) False XLOC_017953
TCONS_00036810 lncRNA upstream 169055 13309282 ~ 13313010 (-) False XLOC_017953
TCONS_00036809 lncRNA upstream 169055 13309282 ~ 13313010 (-) True XLOC_017953
TCONS_00035405 lncRNA upstream 514358 13654585 ~ 13659433 (-) False XLOC_017958
TCONS_00035410 lncRNA upstream 754691 13894918 ~ 13896672 (-) True XLOC_017961
TCONS_00035388 mRNA downstream 83628 12936096 ~ 12936861 (-) True XLOC_017950
TCONS_00035386 mRNA downstream 377804 12566101 ~ 12642685 (-) True XLOC_017942
TCONS_00035383 mRNA downstream 1842467 11098239 ~ 11178022 (-) True XLOC_017937
TCONS_00035382 mRNA downstream 2532538 10484015 ~ 10487951 (-) True XLOC_017934
TCONS_00035379 mRNA downstream 2732333 10287061 ~ 10288156 (-) True XLOC_017932
TCONS_00035394 mRNA upstream 220429 13360656 ~ 13394780 (-) True XLOC_017954
TCONS_00035396 mRNA upstream 424704 13564931 ~ 13624618 (-) False XLOC_017956
TCONS_00035397 mRNA upstream 427833 13568060 ~ 13625588 (-) False XLOC_017956
TCONS_00035398 mRNA upstream 453253 13593480 ~ 13623882 (-) False XLOC_017956
TCONS_00035399 mRNA upstream 470530 13610757 ~ 13624008 (-) True XLOC_017956
TCONS_00035387 other downstream 413068 12605718 ~ 12607421 (-) True XLOC_017943
TCONS_00035374 other downstream 2966788 10053405 ~ 10053701 (-) True XLOC_017928
TCONS_00035371 other downstream 3114105 9906268 ~ 9906384 (-) True XLOC_017925
TCONS_00035370 other downstream 3239622 9777179 ~ 9780867 (-) True XLOC_017924
TCONS_00035367 other downstream 3260065 9752531 ~ 9760424 (-) False XLOC_017923
TCONS_00035393 other upstream 63839 13204066 ~ 13208752 (-) True XLOC_017952
TCONS_00035395 other upstream 229000 13369227 ~ 13369343 (-) True XLOC_017955
TCONS_00035409 other upstream 678168 13818395 ~ 13818510 (-) True XLOC_017960
TCONS_00035412 other upstream 863247 14003474 ~ 14012826 (-) True XLOC_017963
TCONS_00035421 other upstream 1314681 14454908 ~ 14455626 (-) True XLOC_017968

Expression Profile

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