RNA id: TCONS_00036456


Basic Information

Item Value
RNA id TCONS_00036456
length 1441
lncRNA type inter_gene
GC content 0.39
exon number 3
gene id XLOC_017948
representative True

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 12854967 ~ 12857046 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ctgggtcgtacgaattcgtacgatttattCACCGCCTTTAGATCACCTGTAAATTCGTACTAATTCGTACGATTTAATCAAGCGCCATCTCATGGGTTTTTTTCTTCTCGTTTGCAAACCATCGCGATATTTACTGCAGTTTGCATATGCCACTTCTTGATACTCTCACTCTCATCACATTCATCTATTCTTCACTCCATTAAATACAACACAacggctcttttaagagccatcATTAGCTAAAATCTCactcaatttctctctctctcactcactctctctctcatactCATCTTcttctcacactctctctctctctctctctcacacacacacacacatacacacacacacacacatacacaatttatattttcacttttttttctcttcaataTGGCATCTTGTCAAAAGTCAGATTTTGACCAGTTATGTGAGGAAGCTGCCATTCTTACAAGGGAACTTGAATGCAAAGCAGCAAATTCTGCACTTGAAGCAGCTACCAGGGAGGCTGAACAAGTTCTACAGACGTTTAACCTTCCaccaTTAAATACACAGAAGACCAAACGTGCCTGCAGCTCCCTTCCCAAACCAGTTTCATTCGTGGAGAGGGATCAGTTTGGTCATCTTGTGCCTAAACGAAGAAGGCAGAAATCTTCCAAGGCAAACATTTGCGATGGTATGGCTATAATAAATTTTAGCATATTGTGTATTATTGTAGTGGACACACACATATTTCTTATAATGTGTAGCACCATCATACATTTTctgtaatgtataattatataaatctattttttttttagctactgTGATCAATAGTGCAGGTATGTCTTCATCTTTGGGATCTGGTCAAAGAGACATTGATCATAGTGAGTAATAACTCCAACAATTTTCAAAGTAACTAGCCGTGCAtggttattattactattttgtcATTTGCTCCATTGTTCTTATTTGAAGGTCCATCACTGTCTGCTCACACTGTTTGGGCAGCAGCGGAAAGCATTGGTAAGTATTTCTCTGTAATGGTCAGTCTAACCAACTGCCATGAACACtataattgcatttattttttcctaataCAGAAACTCTTCATCAAGAAATTGAGGACCTGCTAGGTGATACTGATCACATTAAGTGTTCAATTCCGACTTCCTCAAACACATGGGCAATTCGCATTGAGCAGTCTAAAAAGAAGTGGGCAGCTTTAAGGCCTGAGATGCTGGATTCTTTATTATCTGCTGAATATACCGAGATTAGGCAGTGCCAGCACTGCCTACTGAAGCGATCTGTCATACGATGTAAAGACTGCATTCCCAAGCAGCTATTATGTCCAGAGTGTGATATTTTGCTCCACAAAAGAAAACTTCACAACCGTGAAACTGATGTGGAAGGATTCTTTAGGCCCATATCCCCAAGTACTTTGATTAAGATGGAT

Function

GO:

id name namespace
GO:0048731 system development biological_process
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0016070 RNA metabolic process biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0002009 morphogenesis of an epithelium biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0043009 chordate embryonic development biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0030154 cell differentiation biological_process
GO:0048513 animal organ development biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0032925 regulation of activin receptor signaling pathway biological_process
GO:0032926 negative regulation of activin receptor signaling pathway biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0007275 multicellular organism development biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0060429 epithelium development biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0048856 anatomical structure development biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:0048598 embryonic morphogenesis biological_process
GO:0010467 gene expression biological_process
GO:0010468 regulation of gene expression biological_process
GO:0048869 cellular developmental process biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0048646 anatomical structure formation involved in morphogenesis biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0050789 regulation of biological process biological_process
GO:0050794 regulation of cellular process biological_process
GO:0007399 nervous system development biological_process
GO:0032501 multicellular organismal process biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032502 developmental process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0007420 brain development biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0060322 head development biological_process
GO:0009790 embryo development biological_process
GO:0009792 embryo development ending in birth or egg hatching biological_process
GO:0044391 ribosomal subunit cellular_component
GO:0022625 cytosolic large ribosomal subunit cellular_component
GO:0022626 cytosolic ribosome cellular_component
GO:0015934 large ribosomal subunit cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0005109 frizzled binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:0000987 cis-regulatory region sequence-specific DNA binding molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0003735 structural constituent of ribosome molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00036454 lncRNA downstream 162 12853911 ~ 12854805 (-) False XLOC_017947
TCONS_00036453 lncRNA downstream 162 12853911 ~ 12854805 (-) True XLOC_017947
TCONS_00036452 lncRNA downstream 1606 12852898 ~ 12853361 (-) True XLOC_017946
TCONS_00036451 lncRNA downstream 2652 12850585 ~ 12852315 (-) True XLOC_017945
TCONS_00036450 lncRNA downstream 195872 12657817 ~ 12659095 (-) True XLOC_017944
TCONS_00036457 lncRNA upstream 70136 12927182 ~ 12927955 (-) True XLOC_017949
TCONS_00036808 lncRNA upstream 452236 13309282 ~ 13312947 (-) False XLOC_017953
TCONS_00036810 lncRNA upstream 452236 13309282 ~ 13313010 (-) False XLOC_017953
TCONS_00036809 lncRNA upstream 452236 13309282 ~ 13313010 (-) True XLOC_017953
TCONS_00035405 lncRNA upstream 797539 13654585 ~ 13659433 (-) False XLOC_017958
TCONS_00035386 mRNA downstream 212282 12566101 ~ 12642685 (-) True XLOC_017942
TCONS_00035383 mRNA downstream 1676945 11098239 ~ 11178022 (-) True XLOC_017937
TCONS_00035382 mRNA downstream 2367016 10484015 ~ 10487951 (-) True XLOC_017934
TCONS_00035379 mRNA downstream 2566811 10287061 ~ 10288156 (-) True XLOC_017932
TCONS_00035377 mRNA downstream 2734525 10099109 ~ 10120442 (-) False XLOC_017931
TCONS_00035388 mRNA upstream 79050 12936096 ~ 12936861 (-) True XLOC_017950
TCONS_00035390 mRNA upstream 163443 13020489 ~ 13140309 (-) False XLOC_017951
TCONS_00035391 mRNA upstream 163627 13020673 ~ 13140346 (-) False XLOC_017951
TCONS_00035392 mRNA upstream 163627 13020673 ~ 13142357 (-) True XLOC_017951
TCONS_00035394 mRNA upstream 503610 13360656 ~ 13394780 (-) True XLOC_017954
TCONS_00035387 other downstream 247546 12605718 ~ 12607421 (-) True XLOC_017943
TCONS_00035374 other downstream 2801266 10053405 ~ 10053701 (-) True XLOC_017928
TCONS_00035371 other downstream 2948583 9906268 ~ 9906384 (-) True XLOC_017925
TCONS_00035370 other downstream 3074100 9777179 ~ 9780867 (-) True XLOC_017924
TCONS_00035367 other downstream 3094543 9752531 ~ 9760424 (-) False XLOC_017923
TCONS_00035389 other upstream 163443 13020489 ~ 13140227 (-) False XLOC_017951
TCONS_00035393 other upstream 347020 13204066 ~ 13208752 (-) True XLOC_017952
TCONS_00035395 other upstream 512181 13369227 ~ 13369343 (-) True XLOC_017955
TCONS_00035409 other upstream 961349 13818395 ~ 13818510 (-) True XLOC_017960
TCONS_00035412 other upstream 1146428 14003474 ~ 14012826 (-) True XLOC_017963

Expression Profile

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