RNA id: TCONS_00003572


Basic Information

Item Value
RNA id TCONS_00003572
length 1980
RNA type mRNA
GC content 0.59
exon number 2
gene id XLOC_001772
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 252425 ~ 257043 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGGGGACGTGTCTCTGGATACTGATGCTCATGGTGTCGCAGGTCTCACCGTACAGACGTCCAGCTGAGGATTCACCCTGTCGAGTGcATCAGGACGATGTGGACTGCAGCAGTCTGAGTCTGAGACGGGTCCCGGCGCCGCTGCCCTCTAGTATCCGCCTGCTGGATCTGTCCCAAAACCTCCTGCAGAACCTGACCCTTCAGGATCTGCCGTCCCGCTCCAGCCTCCGCCGTCTGGACCTGCATCACAACCAGATCCAGTTCCTGCAGCCGGGGCTCTTCCGGGACCTGCTGCATCTGGAGGATCTGGACCTGTCGGGGAACGCGCTGGACCTGTACGCCGCTCTGCACACCCCCCTCGGCCCGCTGCCGGCCCTGCGTCGCCTGGACCTCTCCGGTAACGGGCTCTTCACTGATATGAGTGATTATTTCCTGAGCGACGCCCCGGCCCTCACTAACCTCTCCTTAGATGGAAACAGCATCACCAAAATCAGCAGAACCACATTCAACGGCTCGCAGGCGCTCCAGAACATTGACCTACACAACAACGTGATTATAGAGATCGAGGAGGGAGCGTTTGAGTTCCTGACGGAGCTCTCTGAGCTGGATCTGTCCGTCAACTCCATTTCCTGCATCACAGACTTCAACCTGGTTCAGCTCCGAACGCTGAACCTAAGCAGAAACAGCCTGACGAACTTCCAGAGCTTGGACATGGAGGACGAGTTCCAGCTTCAGCATCTGGACCTCAGGGAGAACAAGCTGCTCTACTTCCCTGTCCTGCCCCAGAGGAACAGACTGATGTACCTGGATCTGTCCAGAAACCTGCTGCGCAGCGTCAACTGCTCGGGTCCGCTGGAGGAGCTGGAGAGCCTGCGGGAGAGCGGGTATCTGCTGACGGCTCACGATAAACCGCTGACTCTGTGTGCCAATGAGCGGCAGCAGGAGCTCGGCAGGCTGCTGTACCTGGACCTGAGCTTCAACCAGCTGAAGACGCTCTCGTCCTCCTTCTTCAGCAGCATGGCTGCTCTGGAGAGCCTGAACATCAGCAATAACTGCCTGCAGAGCTTCAGCGTGGACTCTCTGCGCTCCCTGAAGACTCTGGACCTCAGCTTTAATAACCTGCAGAACCTGTCCTTCAGCGGAGGCGCTCTGCCGGCGCTGGAGGTGCTGCTCCTGCAGGGAAACGCTCTCCATCTGTTGGACGCTCATATATTCTCCAGCCTCCCCAGCATCCGCAGCCTCCACCTCCAGCAGAATCTCCTCAGCATCTGTGCCGACCCGCAGATCTCCAGTGGATGCGTGCATCTCTCTGATATCCCATCCCTCACCTACCTGTACCTTTCAGAGAACTCATTATCCTCCATCCCTGATGGAGCATTTAAAGGATCTCCCCTGCTCATCCTGGATTTATCCCTGAACCCCGGCGTCGACATCACCGCTGCGTCTCTGTCAGGTGTGGAGACGTCTCTAACTCATCTCTCTCTGAGAGGAAACCAGCTGCATTCGCTCAGCATTGACTTCAGGGTCTTCCAGAAGCTGAGATCTCTGGATGTGTCGGTGAACCGTCTGTCAGGTGTGTCTCCGTGGAGCGAGGACTCATCAGTGGAGATCCTGAATCTGCAGAATAACCGTGTGGAGGCGCTGGGCTCCGCGCTGCTGCAGGGGCGGCTCAGGACGCTGTATGTGGGCTGGAACCCGCTGAGCTGCTGCAGGAACCCGCAGCTCCTGGATCTGCTGCAGCAGGAGCGTCTGCACGTGCCGGACCTCGCCGCCGCCACCTGCTGGTACAGTGGAGACGTGGAGCAGGTGGAGGTCAGTGTGAGCGCGGCGCTGCCCGAGCTCTGCTCGTCTGCGGACTCCAGAGTGCTGTGGGTCAGCCTGATGGTGGCGCTGGCGCTGGGGCTGGCGCTGGTGCTGACCGTCAGCCTGAAGCTCTGCCACAGCAGAAAACACAGGTTCAAGAGAGGCTTCAAAGCTTGA

Function

GO:

id name namespace
GO:0030168 platelet activation biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-090630-1 Acts upstream of or within platelet activation. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human LRRC32 (leucine rich repeat containing 32).

Ensembl:

ensembl_id ENSDART00000059478

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005789 lncRNA upstream 58543 187819 ~ 193882 (+) False XLOC_001769
TCONS_00003568 lncRNA upstream 58543 190543 ~ 193882 (+) True XLOC_001769
TCONS_00003567 lncRNA upstream 61942 187819 ~ 190483 (+) False XLOC_001769
TCONS_00005787 lncRNA upstream 118456 121898 ~ 133969 (+) False XLOC_001767
TCONS_00005790 lncRNA downstream 25281 282324 ~ 283931 (+) True XLOC_001773
TCONS_00005661 lncRNA downstream 141301 398344 ~ 398759 (+) True XLOC_001776
TCONS_00005791 lncRNA downstream 162190 419233 ~ 420892 (+) True XLOC_001779
TCONS_00005662 lncRNA downstream 283250 540293 ~ 541332 (+) False XLOC_001786
TCONS_00005792 lncRNA downstream 283389 540432 ~ 543582 (+) False XLOC_001786
TCONS_00003571 mRNA upstream 28540 213937 ~ 223885 (+) True XLOC_001771
TCONS_00003570 mRNA upstream 28559 213878 ~ 223866 (+) False XLOC_001771
TCONS_00003565 mRNA upstream 55610 187760 ~ 196815 (+) False XLOC_001769
TCONS_00003566 mRNA upstream 61453 187764 ~ 190972 (+) False XLOC_001769
TCONS_00003564 mRNA upstream 92828 158590 ~ 159597 (+) True XLOC_001768
TCONS_00003573 mRNA downstream 77584 334627 ~ 349756 (+) True XLOC_001774
TCONS_00003574 mRNA downstream 117999 375042 ~ 382616 (+) True XLOC_001775
TCONS_00003575 mRNA downstream 142320 399363 ~ 400213 (+) True XLOC_001777
TCONS_00003576 mRNA downstream 149103 406146 ~ 417188 (+) False XLOC_001778
TCONS_00003577 mRNA downstream 156459 413502 ~ 417188 (+) True XLOC_001778
TCONS_00003569 other upstream 40478 211782 ~ 211947 (+) True XLOC_001770
TCONS_00003583 other downstream 249520 506563 ~ 507256 (+) True XLOC_001784
TCONS_00003590 other downstream 548201 805244 ~ 805359 (+) True XLOC_001790
TCONS_00003597 other downstream 1407879 1664922 ~ 1665038 (+) True XLOC_001797
TCONS_00003605 other downstream 1918540 2175583 ~ 2267357 (+) False XLOC_001805
TCONS_00003616 other downstream 2431522 2688565 ~ 2688681 (+) True XLOC_001815

Expression Profile

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