RNA id: TCONS_00003564


Basic Information

Item Value
RNA id TCONS_00003564
length 1008
RNA type mRNA
GC content 0.60
exon number 1
gene id XLOC_001768
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 158590 ~ 159597 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGACTAATACCGTACGCCGCCTCGTCTCCAAAGACGGACGCAGCAACGTAAAAATTGACAATGTGGAGGGCATGGTCAAACTCTTCCTGCATGACCTCTGGACGACGGTGGTGGACATGAAGTGGCGTTATAAGATCACGCTCTTCGCCTCCACCTTTGTCATGACGTGGTTCGTGTTCGGTGTGCTCTTCTACCTCATCGGCCTGAGGAACGGAGACTTCCATGCAGACCCGTCCTCCAACCACACACCCTGCGTCATGAACGTGCACACACTGACCGGAGCGTACCTGTTCTCCCTGGAGACCCAGACCACCATCGGCTATGGGTTTCGGCACGTGTCGGAGGAGTGTCCGCTGGCCATCGGGGCACTGGTGCTGCAGCTGGTGCTCACAGGGCTGGCTGAGATCTTCGTGACCGGAGCCTTTCTTGCCAAACTAGCACGGCCTAAGAAGCGTGCGGGAACCATCAAGTTCAGCCGGTGTGCGGTGGTGTGCCGGAGGGGCGGACGCTGGTGCCTGATGGTGCGTGTGGCCAACATGCGGAGCAGCCTGCTGATCCAGTGCCAGCTGTCAGGGAAGCTGCTGGCGCCGCACGTCACACTGGAGGGCCAGAAAACACTGGTACACCAGACCACGGTGGACTTCCAGATGGACTCCAGTGGAGAGTGTCCTTTCCTGCTGCTCCCGCTCACCTTCTACCACGTGCTGGACGAGAGGAGCCCGCTGGCGGACCTTACCGCACACAGCCTGCAGAAACGGGACTTTGAGCTACTGCTGACGCTGAATGCCACCGTGGAGTCCACGGCCGCATCCTGCCAAAGTCGCACCTCATACCTGCCGCAGGAGATCCTGTGGGGGCAGGAGTTCAGGCCGGTGCTGGCCAACACCAGCGGGACACTGAGCGCAGACTTCAGCCTCTTCCACAGTGTGCAGATCTGCAGAGAACAGAGTCACACTGCGGAGAAGATGCAGCTGGAGGAGGAGTACAGAGGGGGACAGGGGCAGTGA

Function

GO: NA

KEGG:

id description
ko04971 Gastric acid secretion
ko04040 Ion channels

ZFIN:

id description
ZDB-GENE-150928-1 Orthologous to human KCNJ15 (potassium inwardly rectifying channel subfamily J member 15).

Ensembl:

ensembl_id ENSDART00000081982

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005787 lncRNA upstream 24621 121898 ~ 133969 (+) False XLOC_001767
TCONS_00005788 lncRNA upstream 33291 121926 ~ 125299 (+) True XLOC_001767
TCONS_00005786 lncRNA upstream 98842 58893 ~ 59748 (+) True XLOC_001764
TCONS_00005785 lncRNA upstream 127752 30360 ~ 30838 (+) True XLOC_001763
TCONS_00003567 lncRNA downstream 28222 187819 ~ 190483 (+) False XLOC_001769
TCONS_00005789 lncRNA downstream 28222 187819 ~ 193882 (+) False XLOC_001769
TCONS_00003568 lncRNA downstream 30946 190543 ~ 193882 (+) True XLOC_001769
TCONS_00005790 lncRNA downstream 122727 282324 ~ 283931 (+) True XLOC_001773
TCONS_00005661 lncRNA downstream 238747 398344 ~ 398759 (+) True XLOC_001776
TCONS_00003562 mRNA upstream 42554 110879 ~ 116036 (+) False XLOC_001766
TCONS_00003563 mRNA upstream 42561 111023 ~ 116029 (+) True XLOC_001766
TCONS_00003561 mRNA upstream 47462 110868 ~ 111128 (+) False XLOC_001766
TCONS_00003560 mRNA upstream 76885 76864 ~ 81705 (+) True XLOC_001765
TCONS_00003559 mRNA upstream 130392 23088 ~ 28198 (+) True XLOC_001762
TCONS_00003565 mRNA downstream 28163 187760 ~ 196815 (+) False XLOC_001769
TCONS_00003566 mRNA downstream 28167 187764 ~ 190972 (+) False XLOC_001769
TCONS_00003570 mRNA downstream 54281 213878 ~ 223866 (+) False XLOC_001771
TCONS_00003571 mRNA downstream 54340 213937 ~ 223885 (+) True XLOC_001771
TCONS_00003572 mRNA downstream 92828 252425 ~ 257043 (+) True XLOC_001772
TCONS_00003569 other downstream 52185 211782 ~ 211947 (+) True XLOC_001770
TCONS_00003583 other downstream 346966 506563 ~ 507256 (+) True XLOC_001784
TCONS_00003590 other downstream 645647 805244 ~ 805359 (+) True XLOC_001790
TCONS_00003597 other downstream 1505325 1664922 ~ 1665038 (+) True XLOC_001797
TCONS_00003605 other downstream 2015986 2175583 ~ 2267357 (+) False XLOC_001805

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000203_00167191_00182019.mRNA True 2592 mRNA 0.47 4 CI01000203 166960 ~ 182952 (+)
bowfin (Amia calva) AMCG00002401 True 1398 mRNA 0.66 7 CM030136.1 13191029 ~ 13194076 (+)