RNA id: TCONS_00003561


Basic Information

Item Value
RNA id TCONS_00003561
length 156
RNA type mRNA
GC content 0.56
exon number 2
gene id XLOC_001766
representative False

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 110868 ~ 116036 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACGCAGTGCGCCTGCGCAGAAACACAAGGAAGCACCATCAGGAAATAAGACATgtGTCGCTGCTGGAGATGGTGATGGTGGAGAACTCTCCTTCTCCTCTGCCGGAAAGAGCCATCTACGGCTTTGTGCTGTTCCTGGGCGCTCAGCTGGGCTTCT

Function

GO:

id name namespace
GO:0046328 regulation of JNK cascade biological_process
GO:0006506 GPI anchor biosynthetic process biological_process
GO:1904103 regulation of convergent extension involved in gastrulation biological_process
GO:0060026 convergent extension biological_process
GO:0060028 convergent extension involved in axis elongation biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016740 transferase activity molecular_function
GO:0017176 phosphatidylinositol N-acetylglucosaminyltransferase activity molecular_function

KEGG:

id description
ko00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis

ZFIN:

id description
ZDB-GENE-030131-4041 Predicted to enable phosphatidylinositol N-acetylglucosaminyltransferase activity. Acts upstream of or within convergent extension involved in axis elongation; regulation of JNK cascade; and regulation of convergent extension involved in gastrulation. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in blastomere; central nervous system; and somite. Human ortholog(s) of this gene implicated in developmental and epileptic encephalopathy 55. Orthologous to human PIGP (phosphatidylinositol glycan anchor biosynthesis class P).

Ensembl:

ensembl_id ENSDART00000135572

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005786 lncRNA upstream 51120 58893 ~ 59748 (+) True XLOC_001764
TCONS_00005785 lncRNA upstream 80030 30360 ~ 30838 (+) True XLOC_001763
TCONS_00005787 lncRNA downstream 10770 121898 ~ 133969 (+) False XLOC_001767
TCONS_00005788 lncRNA downstream 10798 121926 ~ 125299 (+) True XLOC_001767
TCONS_00003567 lncRNA downstream 76691 187819 ~ 190483 (+) False XLOC_001769
TCONS_00005789 lncRNA downstream 76691 187819 ~ 193882 (+) False XLOC_001769
TCONS_00003568 lncRNA downstream 79415 190543 ~ 193882 (+) True XLOC_001769
TCONS_00003560 mRNA upstream 29163 76864 ~ 81705 (+) True XLOC_001765
TCONS_00003559 mRNA upstream 82670 23088 ~ 28198 (+) True XLOC_001762
TCONS_00003557 mRNA upstream 88088 15970 ~ 22780 (+) False XLOC_001761
TCONS_00003564 mRNA downstream 47462 158590 ~ 159597 (+) True XLOC_001768
TCONS_00003565 mRNA downstream 76632 187760 ~ 196815 (+) False XLOC_001769
TCONS_00003566 mRNA downstream 76636 187764 ~ 190972 (+) False XLOC_001769
TCONS_00003570 mRNA downstream 102750 213878 ~ 223866 (+) False XLOC_001771
TCONS_00003571 mRNA downstream 102809 213937 ~ 223885 (+) True XLOC_001771
TCONS_00003569 other downstream 100654 211782 ~ 211947 (+) True XLOC_001770
TCONS_00003583 other downstream 395435 506563 ~ 507256 (+) True XLOC_001784
TCONS_00003590 other downstream 694116 805244 ~ 805359 (+) True XLOC_001790
TCONS_00003597 other downstream 1553794 1664922 ~ 1665038 (+) True XLOC_001797
TCONS_00003605 other downstream 2064455 2175583 ~ 2267357 (+) False XLOC_001805

Expression Profile

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