RNA id: TCONS_00003559


Basic Information

Item Value
RNA id TCONS_00003559
length 2002
RNA type mRNA
GC content 0.59
exon number 9
gene id XLOC_001762
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 23088 ~ 28198 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTGCAGTGTTCAGACGCTGATCTGGAGCTCCAGACATGCCGAAGATCAGCCGGAGAGCGGCGCGGCGCAGCGGGCAGGAGGAGCGTCTGCAGCGGGTCAGCTCTGCCTCTTCACCCGCGACTCAGCGCTCCGGGTCCCCGCAggagattgagCAGGAGGAGCGTCTGCAGCGGGTCAGCACTCTCTCCAGCTCCGGGTCCCCGCAGGAGTTCTTCCAGAGCCTGATCCGCCCGCTGGACCTGCAGGAGTTCTTCCAGCGGTTCTGGGAGAGACAGCCGCTGGTGCTGCACCGCTCGGACGCGGCTCTGGCCGGTTATTACGGCTCTCTGTTCCCACTGTCGGGGCTCCGGCGGCTCTGCGCCCGCGGCCTGCAGTACGGCACCGACATCAACACCTGCCGCTGCGTGCGCGGACAGAAGCGGCTGCTAAACCGAGCTGGAGCCGTCGACTTCTGTCTGCTGGAGAGAGACTTCCTGGAGAAGAAGGCCACCATACAGTTCCACCAGCCGCAGAGGTTtcaggatgaGCTGTGGCGTATCCAGGAGCGTCTGGAGTGTTTCTTCGGGTGTCTGGTGGGCTCTAATGTCTACATCACCCCTGCCGGCGCCCAGGGGCTCCCCCCGCACTACGATGATGTGGAGgtgctgATCCTGCAGCTGGAGGGACAGAAGCACTGGAGACTCTATGAGCCCACCGTCCCGCTGGCGCGCGAGTACAGCCTGGAGCCCGAGGGCCGCATCGGGGCCCCCACACACGACTTCatcctgcaggcTGGAGATCTGCTGTATTTTCCCAGAGGAACCATCCACCAGGCGGACACTCCAGCAGGAGCAGGACACTCCACACACCTGACCCTCAGCACCTACcagaacatgtgtgtgtgtgcagtccacaacgtcacacacacacacacacacacgctacagAATGTGTtagtgctgcattcattcattgtgtgcgtgcgtgcgtgcaggTCGTGGGGGGATCTGCTGCTGGACCTGATGCCCGGTTGTGTGTTTGACCGTATGAAGACTGACTGTGAGCTGCGCACCGGCCTGCCCCGCGGCCTGCTGACGacccCCAGTATCTCTCCAGCGGTCAGTCATCAGCTCAGTGTGTTCCTGCAGCGTCTGGCCGATGTTGTGGATCACCAGGGTCAGACTCTGCGCTCCAGCTCCATGAGGAGAGACTTCATCTCCCACCGGCTGCCCCCGTTCGTGCAGGACCCTCAGCTGCTGCAGCCCGTGGGTGGAGCTCCAGCGCTGCAGGACACTGTGAGTCTCCGCTTTAAAGATCATCTGCTGCTGACGGTGGAGCCCAGTCCAGACCACAccgacgAGGCCACTGAGCTGCTGGTGTATGTTCTGCACTCTCTGAGGAACCGCAGGGACACACACATGATGATGGGAGCGtctgatgaagatgaggatgacgAAGAGTCTCAGGTCGGGGGTCTGCGTTTCCCGCTCAGTCATCTGGAGGCTCTTCAGCAGCTGCTGGTCAGTGATAGAGTCCCGGTGGAGGATCTGCAGCTCCAGCAGGAGGACAAACTCAATCTGCTGCTGGCTCTGTGGAGCGAAGGCCTGCTGCGGGTCACTGGAGCCCTGGAGAACCACCACTGAGACATGAAGCGTGTGTGTTCTGCTGAGCGCCGTTACGctgtcagtagtgtgtgtgagGGGTTATATGTGGGTTTGATTCCTCTCCTGATATCCACCTGCAGGACGGGTGACACTGGACTATAATAACTCTGAGCAGTCGagctgatgtcctgcagattcagcctgttcacacacacacacacacagtcttccTGTACAGTAAAGAGTGTGTATAGCAGCGCTCATctgctgtgtgtgagtgtgaatgctCGAGTTGAGTTTAGCAGGgcttctctttgtgtgtgtgtgtgtgtgttttacacactgaacacactctttctctctgtgttttcTATCAGTATGAACTGTACAGCTGTTCCTCATTAAAGCAGAGACTCTTC

Function

GO:

id name namespace
GO:0034720 histone H3-K4 demethylation biological_process
GO:0070544 histone H3-K36 demethylation biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0005634 nucleus cellular_component
GO:0005730 nucleolus cellular_component
GO:0016706 2-oxoglutarate-dependent dioxygenase activity molecular_function
GO:0005506 iron ion binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0016491 oxidoreductase activity molecular_function
GO:0051213 dioxygenase activity molecular_function
GO:0032453 histone demethylase activity (H3-K4 specific) molecular_function
GO:0051864 histone demethylase activity (H3-K36 specific) molecular_function

KEGG:

id description
ko03009 Ribosome biogenesis
ko03036 Chromosome and associated proteins

ZFIN:

id description
ZDB-GENE-040426-1283 Predicted to enable histone demethylase activity (H3-K36 specific) and histone demethylase activity (H3-K4 specific). Predicted to be involved in histone H3-K36 demethylation and histone H3-K4 demethylation. Predicted to be located in nucleus. Predicted to be active in nucleolus. Is expressed in immature eye; nervous system; neural plate; segmental plate; and somite. Orthologous to human RIOX2 (ribosomal oxygenase 2).

Ensembl:

ensembl_id ENSDART00000022840

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005785 lncRNA downstream 2162 30360 ~ 30838 (+) True XLOC_001763
TCONS_00005786 lncRNA downstream 30695 58893 ~ 59748 (+) True XLOC_001764
TCONS_00005787 lncRNA downstream 93700 121898 ~ 133969 (+) False XLOC_001767
TCONS_00005788 lncRNA downstream 93728 121926 ~ 125299 (+) True XLOC_001767
TCONS_00003567 lncRNA downstream 159621 187819 ~ 190483 (+) False XLOC_001769
TCONS_00003557 mRNA upstream 308 15970 ~ 22780 (+) False XLOC_001761
TCONS_00003560 mRNA downstream 48666 76864 ~ 81705 (+) True XLOC_001765
TCONS_00003561 mRNA downstream 82670 110868 ~ 111128 (+) False XLOC_001766
TCONS_00003562 mRNA downstream 82681 110879 ~ 116036 (+) False XLOC_001766
TCONS_00003563 mRNA downstream 82825 111023 ~ 116029 (+) True XLOC_001766
TCONS_00003564 mRNA downstream 130392 158590 ~ 159597 (+) True XLOC_001768
TCONS_00003569 other downstream 183584 211782 ~ 211947 (+) True XLOC_001770
TCONS_00003583 other downstream 478365 506563 ~ 507256 (+) True XLOC_001784
TCONS_00003590 other downstream 777046 805244 ~ 805359 (+) True XLOC_001790
TCONS_00003597 other downstream 1636724 1664922 ~ 1665038 (+) True XLOC_001797
TCONS_00003605 other downstream 2147385 2175583 ~ 2267357 (+) False XLOC_001805

Expression Profile

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