Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00003563 |
| length | 1472 |
| RNA type | mRNA |
| GC content | 0.46 |
| exon number | 4 |
| gene id | XLOC_001766 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007121.7 |
| NCBI id | CM002894.2 |
| chromosome length | 45420867 |
| location | 110868 ~ 116036 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0046328 | regulation of JNK cascade | biological_process |
| GO:0006506 | GPI anchor biosynthetic process | biological_process |
| GO:1904103 | regulation of convergent extension involved in gastrulation | biological_process |
| GO:0060026 | convergent extension | biological_process |
| GO:0060028 | convergent extension involved in axis elongation | biological_process |
| GO:0016020 | membrane | cellular_component |
| GO:0016021 | integral component of membrane | cellular_component |
| GO:0016740 | transferase activity | molecular_function |
| GO:0017176 | phosphatidylinositol N-acetylglucosaminyltransferase activity | molecular_function |
| id | description |
|---|---|
| ko00563 | Glycosylphosphatidylinositol (GPI)-anchor biosynthesis |
| id | description |
|---|---|
| ZDB-GENE-030131-4041 | Predicted to enable phosphatidylinositol N-acetylglucosaminyltransferase activity. Acts upstream of or within convergent extension involved in axis elongation; regulation of JNK cascade; and regulation of convergent extension involved in gastrulation. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in blastomere; central nervous system; and somite. Human ortholog(s) of this gene implicated in developmental and epileptic encephalopathy 55. Orthologous to human PIGP (phosphatidylinositol glycan anchor biosynthesis class P). |
| ensembl_id | ENSDART00000056672 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00005786 | lncRNA | upstream | 51275 | 58893 ~ 59748 (+) | True | XLOC_001764 |
| TCONS_00005785 | lncRNA | upstream | 80185 | 30360 ~ 30838 (+) | True | XLOC_001763 |
| TCONS_00005787 | lncRNA | downstream | 5869 | 121898 ~ 133969 (+) | False | XLOC_001767 |
| TCONS_00005788 | lncRNA | downstream | 5897 | 121926 ~ 125299 (+) | True | XLOC_001767 |
| TCONS_00003567 | lncRNA | downstream | 71790 | 187819 ~ 190483 (+) | False | XLOC_001769 |
| TCONS_00005789 | lncRNA | downstream | 71790 | 187819 ~ 193882 (+) | False | XLOC_001769 |
| TCONS_00003568 | lncRNA | downstream | 74514 | 190543 ~ 193882 (+) | True | XLOC_001769 |
| TCONS_00003560 | mRNA | upstream | 29318 | 76864 ~ 81705 (+) | True | XLOC_001765 |
| TCONS_00003559 | mRNA | upstream | 82825 | 23088 ~ 28198 (+) | True | XLOC_001762 |
| TCONS_00003557 | mRNA | upstream | 88243 | 15970 ~ 22780 (+) | False | XLOC_001761 |
| TCONS_00003564 | mRNA | downstream | 42561 | 158590 ~ 159597 (+) | True | XLOC_001768 |
| TCONS_00003565 | mRNA | downstream | 71731 | 187760 ~ 196815 (+) | False | XLOC_001769 |
| TCONS_00003566 | mRNA | downstream | 71735 | 187764 ~ 190972 (+) | False | XLOC_001769 |
| TCONS_00003570 | mRNA | downstream | 97849 | 213878 ~ 223866 (+) | False | XLOC_001771 |
| TCONS_00003571 | mRNA | downstream | 97908 | 213937 ~ 223885 (+) | True | XLOC_001771 |
| TCONS_00003569 | other | downstream | 95753 | 211782 ~ 211947 (+) | True | XLOC_001770 |
| TCONS_00003583 | other | downstream | 390534 | 506563 ~ 507256 (+) | True | XLOC_001784 |
| TCONS_00003590 | other | downstream | 689215 | 805244 ~ 805359 (+) | True | XLOC_001790 |
| TCONS_00003597 | other | downstream | 1548893 | 1664922 ~ 1665038 (+) | True | XLOC_001797 |
| TCONS_00003605 | other | downstream | 2059554 | 2175583 ~ 2267357 (+) | False | XLOC_001805 |
