RNA id: TU764711



Basic Information


Item Value
RNA id TU764711
length 921
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G671290
representative False

Chromosome Information


Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 9641232 ~ 9642152 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


gaacacttaccacgctgcgcattggtcctccgatccttcctactactcctcgtcagaggaggaaggagaccGTTACACTAACGGCGAATAAGCTATAAAAAAAATAGAGTCTTCTTCAGGATGAAGGCACAGAGATGCCGAAACATTGGTGATTTACTCAATGAATTACGGGAGTTTATATATAGACTGTGCGACTCTCTTTATTATAGCTTATGGTTAAGTGACAACTACTTTGTAAACACTAACTTTAATTTTCATGTTTCGGCAAAGCCTTCAAGGAACCTATGTTTTTCAGGAGCCTAAATCAAGAGAATTAAATGGGAGAAAGCTGCTTTTCAATCAGAAAAACAACACTGTGTTCCAGCAACATTGTACCCGGGACTAATGAACGTATAAAGAATACAAAAAGGTTAGCTGTGCAGGAATAATGTGGTGTTTCCACAGTGCAGGTTTGATATAATCTGGTCCTCAGGGTGAGAATCTATGCGTCTCCTCCTGAGTACTGCTCTAGAGCAGAGTTTCacaaacttggtcctggggcccctctgggtgcacgttttagtttctgcactacacagctgattaaaaatAACTCTtcgtcaagctttgattatttgaatccaCTGTGTCGTGCTAGGGCAGAAGTTTGGGGAAACGTTACTCTTGGAGGTGAATCACTGATCAAAAGGCCTAaacaagataaatgttttaaacagTTTTAAAACCGTTCAGATCTGGCTTAAATCATTTTTATCCATTGGTATACCTTCATTGATACCAGCGAAAACAAAACTATTTTATATTTCCACCAGGAAATAAAgcctattgttattttttacttttttacaATGTCTATTTGAATATAGTGATATTTCTTAAGAGGTTGGGTGCAACACTGAAAAACTGCAATAAAGACATGGG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU764575 lncRNA downstream 139626 9443905 ~ 9501606 (-) True G671172
TU764596 lncRNA downstream 173596 9467356 ~ 9467636 (-) True G671192
TU764585 lncRNA downstream 184824 9456012 ~ 9456408 (-) True G671181
TU764492 lncRNA downstream 288390 9298636 ~ 9352842 (-) False G671095
TU764494 lncRNA downstream 327825 9298636 ~ 9313407 (-) True G671095
TU764763 lncRNA upstream 17540 9659692 ~ 9660139 (-) True G671335
TU764786 lncRNA upstream 53621 9695773 ~ 9696915 (-) True G671358
TU764808 lncRNA upstream 70413 9712565 ~ 9712780 (-) True G671380
TU764860 lncRNA upstream 106803 9748955 ~ 9749234 (-) True G671431
TU764867 lncRNA upstream 112212 9754364 ~ 9754572 (-) True G671438
NM_001160490.1 mRNA downstream 108580 9525869 ~ 9532652 (-) True LOC100301659
XM_036984685.1 mRNA downstream 515997 9012231 ~ 9125235 (-) False cdc42bpb
XM_036984686.1 mRNA downstream 515997 9012231 ~ 9125235 (-) False cdc42bpb
XM_036984687.1 mRNA downstream 515997 9012231 ~ 9125235 (-) False cdc42bpb
XM_036984689.1 mRNA downstream 515997 9012231 ~ 9125235 (-) True cdc42bpb
XM_021611467.2 mRNA upstream 2373 9644525 ~ 9650080 (-) True LOC110529336
XM_036986822.1 mRNA upstream 131853 9774005 ~ 9791069 (-) True LOC118965597
XM_036984713.1 mRNA upstream 183830 9825982 ~ 9884118 (-) False kif26aa
XM_036984711.1 mRNA upstream 183830 9825982 ~ 9993452 (-) False kif26aa
XM_036984712.1 mRNA upstream 183830 9825982 ~ 9993452 (-) False kif26aa
TU764524 other downstream 293353 9346384 ~ 9347879 (-) True G671122
TU764280 other downstream 376139 9263850 ~ 9265093 (-) True G670905
TU764088 other downstream 679501 8956093 ~ 8961731 (-) True G670733
TU763857 other downstream 1063452 8577051 ~ 8577780 (-) True G670549
TU763341 other downstream 1299112 8340990 ~ 8342120 (-) True G670097
TU765218 other upstream 329530 9971682 ~ 9972812 (-) False kif26aa
TU765219 other upstream 329530 9971682 ~ 9972812 (-) False kif26aa
TU765319 other upstream 472938 10115090 ~ 10121973 (-) False G671820
TU765324 other upstream 472938 10115090 ~ 10121902 (-) False G671820
TU765333 other upstream 472938 10115090 ~ 10121973 (-) False G671820

Expression Profile