RNA id: TU790005


Basic Information

Item Value
RNA id TU790005
length 255
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G694028
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 29336160 ~ 29336414 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

accccgtttaaaggcacttcaatcctttctcttgcccattcaccctctgaatggcacacatacacaacccatgtctcaattgtctaaaggTGTAAACATCCTTCTATAACCTgcatcctccccttcatctacactgattgaagtggatttaacaagtgacatcaataaagaataatagctttaacctggattcacctggtcagtctatggcgtggaaagagcaggtgtccttattGTTGTCTACACTCAGTGTAt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU789983 lncRNA downstream 17042 29318884 ~ 29319118 (-) True G694006
TU789975 lncRNA downstream 27448 29308492 ~ 29308712 (-) True G693998
TU789954 lncRNA downstream 48055 29287882 ~ 29288105 (-) True G693977
TU789952 lncRNA downstream 48773 29287144 ~ 29287387 (-) True G693975
TU789944 lncRNA downstream 53124 29282811 ~ 29283036 (-) True G693967
TU790532 lncRNA upstream 154919 29491333 ~ 29493954 (-) True G694476
TU790535 lncRNA upstream 158601 29495015 ~ 29510015 (-) True G694478
TU790540 lncRNA upstream 172626 29509040 ~ 29527264 (-) True G694483
TU790546 lncRNA upstream 192619 29529033 ~ 29532973 (-) False G694487
TU790547 lncRNA upstream 192619 29529033 ~ 29530155 (-) True G694487
XM_036986866.1 mRNA downstream 112396 29213787 ~ 29223764 (-) True LOC118965624
XM_036986844.1 mRNA downstream 122581 29212152 ~ 29213579 (-) True LOC118965608
XM_036986865.1 mRNA downstream 127232 29204150 ~ 29208928 (-) True LOC118965623
XM_036986864.1 mRNA downstream 132680 29202386 ~ 29203480 (-) True LOC118965622
LOC110529223 mRNA downstream 240125 29046423 ~ 29096035 (-) False LOC110529223
XM_021612264.2 mRNA upstream 124576 29460990 ~ 29465444 (-) False LOC110529760
XM_021612266.2 mRNA upstream 124576 29460990 ~ 29465444 (-) True LOC110529760
XM_021612267.2 mRNA upstream 554141 29890555 ~ 29938325 (-) False LOC110529761
XM_021612268.2 mRNA upstream 554141 29890555 ~ 29938325 (-) False LOC110529761
XM_021612269.2 mRNA upstream 554141 29890555 ~ 29938331 (-) False LOC110529761
TU789639 other downstream 377328 28958395 ~ 28958832 (-) True G693665
TU789291 other downstream 741729 28593341 ~ 28594431 (-) True G693383
TU789000 other downstream 854262 28478817 ~ 28481898 (-) True si:dkey-85n7.8
TU788741 other downstream 1220112 28115736 ~ 28116048 (-) True G692859
TU787547 other downstream 2020225 27315568 ~ 27315935 (-) True G691747
TU790962 other upstream 665349 30001763 ~ 30062168 (-) False G694858
TU790963 other upstream 702174 30038588 ~ 30062168 (-) True G694858
TU792305 other upstream 1510488 30846902 ~ 30847209 (-) True G696068
TU792310 other upstream 1518693 30855107 ~ 30855407 (-) True G696073
TU792778 other upstream 2140940 31477354 ~ 31478027 (-) True G696499

Expression Profile