RNA id: TU791037



Basic Information


Item Value
RNA id TU791037
length 289
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G694931
representative True

Chromosome Information


Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 30143103 ~ 30143391 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ATTATTAGTGTTTACATAGCCCATTTAAATTTCACCCAATGTCTCCAGTCTTTCTAGTTAGGGTGAACAGGCCTCACCAGGAAGTCAGAACAAAGGTCATTCAACCCCattaagtgttttctttccatgTACCTCAGAAACCACttaaaaacatttcaaacatttcCATCATTCTACGTACCCAGTTTACAACCAAATTAACTTCTCTAgagtagggggcagcattttgaattttggatgaaaagcgtgcccacaTTAAACtaccttctactcaggcccagaagatagg

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU791034 lncRNA downstream 2266 30140509 ~ 30140837 (-) True G694928
TU791033 lncRNA downstream 5120 30137741 ~ 30137983 (-) True G694927
TU791025 lncRNA downstream 17156 30125745 ~ 30125947 (-) True G694919
TU791013 lncRNA downstream 30252 30107806 ~ 30112851 (-) True G694908
TU791009 lncRNA downstream 38873 30103972 ~ 30104230 (-) True G694904
TU791038 lncRNA upstream 1364 30144755 ~ 30145042 (-) True G694932
TU791043 lncRNA upstream 6649 30150040 ~ 30151055 (-) True G694937
TU791047 lncRNA upstream 10909 30154300 ~ 30158414 (-) False G694939
TU791048 lncRNA upstream 10909 30154300 ~ 30158311 (-) False G694939
TU791045 lncRNA upstream 11000 30154391 ~ 30158311 (-) False G694939
XM_036985251.1 mRNA downstream 80859 30001764 ~ 30062244 (-) True ches1
XM_036985252.1 mRNA downstream 81136 30001764 ~ 30061967 (-) False ches1
XR_005052851.1 mRNA downstream 103092 30038581 ~ 30040011 (-) True LOC118965505
XM_036985247.1 mRNA downstream 156744 29972511 ~ 29986359 (-) False gtf2a1
XM_021612284.2 mRNA upstream 73617 30217008 ~ 30227240 (-) False LOC110529769
XM_021612285.2 mRNA upstream 73617 30217008 ~ 30227240 (-) False LOC110529769
XM_021612286.2 mRNA upstream 73617 30217008 ~ 30227240 (-) False LOC110529769
XM_021612287.2 mRNA upstream 73617 30217008 ~ 30227240 (-) False LOC110529769
XM_036985272.1 mRNA upstream 76481 30219872 ~ 30227240 (-) False LOC110529769
TU790962 other downstream 80935 30001763 ~ 30062168 (-) False G694858
TU790963 other downstream 80935 30038588 ~ 30062168 (-) True G694858
TU789639 other downstream 1184271 28958395 ~ 28958832 (-) True G693665
TU789291 other downstream 1548672 28593341 ~ 28594431 (-) True G693383
TU789000 other downstream 1661205 28478817 ~ 28481898 (-) True si:dkey-85n7.8
TU792305 other upstream 703511 30846902 ~ 30847209 (-) True G696068
TU792310 other upstream 711716 30855107 ~ 30855407 (-) True G696073
TU792778 other upstream 1333963 31477354 ~ 31478027 (-) True G696499
TU792983 other upstream 1514335 31657726 ~ 31679735 (-) True LOC110529793
TU793919 other upstream 2071095 32214486 ~ 32217549 (-) False LOC110529804

Expression Profile