RNA id: TU819631


Basic Information

Item Value
RNA id TU819631
length 2966
lncRNA type antisense_over
GC content 0.42
exon number 3
gene id G721407
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 53014618 ~ 53100336 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAGAAGCCTGCTCAAAGCCAGTAGAAAAAAATATCTAGGGTCTAACACTGGCACAATGACATACAGGAGAAAAGCTTCAAATAAAatgcaacttttttttttttttttttttttttttttaaatagagagAACATCAAGATCCAACTCCACTGCCTGAAGGGGAAAATGGCTTTTTCTGAGAATAACGTAGCACATCCAACACCAAGAGGCATTAACTAGTTGAACTCTTAAAATGAAACAAGGAACTCAGAAGAAACTTTATTTTCCAGAGATAAGTGGAAGAAATGTTATTGgataaacaaatcaacatttttGACCCTGTAGCATAATGGACTGAATTTCAGTATTTTTCAAAACAACCAGTCACATAGGAATGTCTAAATTAATGCTACCATTTTTTTTTATGAACATATCAATGAAATACTTACACCACAAAATGTTCCATCCTATTAATACCTCAATTTTACATTCCACATCTTTGCTGGAGTTCTATGAGCACGTTATACATACAGTGAAGTTACTGCGCATGTCCTGAGTGGGTTCTAGGTGAGCTTGGCTGTACCAGCAGAAGTCTAAGTGCACCGTTGAGGAGAAAGTGAAATAAATAGCACCTGAAATAAAATCAAAGCCTGACTTAAGCAAAAAATATTGTTGTTGCCGTTAATTGATTGAAATACAAAAGCAACCATTTTTTTAGGGTCGAGTTGCATAGGCGGCTATGAGAACTGAATTCAGTTTTTTAAAAGTACAAGGTCCAAGAGCTTTTTGTAGTCAGTGTTCTAACGAACTTATCAATGTCATAAAATACAACAGCAGCCCGACAGAAATGAAGGAACAAAGTCCTAGTTGAGGCGTTTATAAAATGTAAAGGGTAGATTGCGTATGCAAAATACAGCAACGATTTAGATCTTCAGAACATATAGAACACATGTAGGTACATTACACAACCTTTCAAATGTAATAACACGAAGACCTTTAGTCCAACTAAGTTACCGCTTTACACTTGAACTCACTCTTAACATTCCTTCTCACAAGCTCAGCCCTCAAAGCAAATTCACCTCCTTTTAATCATGAATCGTGTGTTCGGGGGGGGGGGAAAAAAGCATTTGACCCCTGTAAGTAAATCTGGACACTTGAACTATAACACAGTGAAAATAAACACTGTTCATAGTGAGATGATTTGCAGAACATGAAGCAGAGGTTCGAGCTAGAGGTTACACGCTTTCAgctgagagagggaaaggagacaaCGCGCATCTCCGCCTCTGTGGATTTGATAAGATCGCCTATCACGTGTTTAGGAGAATGGTTGTACGGTACAACAGGCTGAACTTGATGTGCAATCAAAtccaaattgtaaaaaaaaagggaaaaaaataaatgtactgGACACTGACATGAGTAAATACAAGTAGAAAAGTAAATAGACATAATAAAACTGGTTTGCAGCAGCACAAATCTCTGTCGTTGAGTCCCTCTCAAACATCAACTACTTGCAAACAGGCACACTTGACACACCAGGTCAGGCGCCAAGGCACCCAAACACCATTCAAACCCCCCCTATCTAACCCTTTTACATTCTGCCTAAACTGGTCTCTCACCCCCTTCAGTTCACAAAATCTAAGCAGATCTGAAACACTGAAGTCAACGGGTCACAGAAAAGAGCATATCACTGGACGAAAAGGAAAAACTAAAATAGGGAAACTCAAGCTCCCTCCCTGACCGGGCAACACGGAGGCCCGTTCTCAGAAGGCGAGGGTTAAAAGTGATAATGGCCGTGAAGCCAGTttttttggaggatatattggcacgagTGTTAGGCCCGAGACAAAGTCAAGGGCTGGCAAACGGTGCCAATACATCCTCCGAACtctggcttcgagggcattatcacttttatgcaACAGGTTAACATATTAAAAATGACgatttacatattttcattaacattacttttatgaatttattcataccatttcatccttccacaagatatagtcccgacgcaaatctagggttgctacccaagccggctggtcatcATTGGTTTGGTTGGCAGTCATTACATTTAGTTCTgaatctatggacacgacccagtcgttcgttctaaatgttttATTATCATACTGGCTGGTAACATTCTTATCCCTTACTTGATTGCTAGATTTCACCTGCCGTTGAAAATGTGCTCtcttgtcaggacactgttgttcagaggagctagccaacaacacagcgaacacaataacttcaaactgactgcaaactagctgcacctAGTTTCAtttgacctgttttctattgatatcTCTTCGTATATATCGATAAAAATGATGCGGATTCATGATTTCGACCgactgagaaaagctgcctgcctgtctcatcCCAATTcttgacacgttcattactatgcgaCAGCTGGTGATCGAATCAAATCTACACTGTTGAAAACTAAACGTTAGTCTAAAAGAAAAGTCGCTTGGCTGGGCTGaagagacagtggattgcgcagtcagatggaactgagtaaataggcattttaacatagatttagctggtggtaacttgcGGAATAGACACTGGcaggaatgcggttttaaccaatcaacattcaggattagacccgcTCGTTGTATAATGCTTTATAAGCGCTGTGTAAACACGTAATAAACTACGTAAGCGCTGCGAGACGTTCAGGAGGCAGTGACGCCCTCCCATTCTACCAGGTACTGGACCTTGCCATCCAGGGTGACCCGGCGGGCCAGGACGCGATACTTCTCCCCGCACTCCAGGCCGTGCACTATATCCGTGGAGTGGAGCCCCGGCAAGGTGTTTTGGGGCTCTGGGGCATGGGGGCCTGGGTGTTGAGGGGGAATCGCATGGTTGGGGGGCAGCAGGGGGACCCGTCGTGGCCGGCCCCGTCTTCTCTTCAGGGGGGGCTTGGCAATGGGCCAGTTGCGGCCCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU819663 lncRNA downstream 67312 53008689 ~ 53010120 (-) True G721435
TU819652 lncRNA downstream 87876 52986917 ~ 52989556 (-) True G721425
TU819641 lncRNA downstream 99902 52974797 ~ 52977530 (-) True G721414
TU819476 lncRNA downstream 258706 52793378 ~ 52818726 (-) False selenof
TU819740 lncRNA upstream 43861 53124374 ~ 53124686 (-) True G721509
TU819693 lncRNA upstream 68980 53149493 ~ 53152132 (-) True G721464
TU819746 lncRNA upstream 72164 53152677 ~ 53152971 (-) True G721515
TU819747 lncRNA upstream 72610 53153123 ~ 53153362 (-) True G721516
TU819703 lncRNA upstream 103209 53183722 ~ 53184178 (-) True G721472
XM_021612915.2 mRNA downstream 9646 53059646 ~ 53067786 (-) True dipk1aa
XM_021611261.2 mRNA downstream 55286 53019506 ~ 53022146 (-) True LOC110529119
XM_021612908.2 mRNA downstream 59328 53015178 ~ 53018104 (-) True LOC110530096
XR_005052899.1 mRNA downstream 75763 52999599 ~ 53001669 (-) True LOC110530097
XM_021612898.2 mRNA downstream 109609 52949001 ~ 52967823 (-) False LOC110530094
XM_036985655.1 mRNA upstream 174684 53255197 ~ 53257589 (-) False LOC110530106
XM_021612923.2 mRNA upstream 174684 53255197 ~ 53257830 (-) False LOC110530106
XM_036985654.1 mRNA upstream 174684 53255197 ~ 53258515 (-) True LOC110530106
XM_036985657.1 mRNA upstream 262090 53342603 ~ 53360245 (-) True nsun4
XM_021611263.2 mRNA upstream 381521 53462034 ~ 53478913 (-) False LOC110529122
TU819491 other downstream 315981 52761039 ~ 52761451 (-) True G721275
TU817704 other downstream 1818413 51252355 ~ 51259019 (-) True LOC110530043
TU817090 other downstream 2137961 50936928 ~ 50939471 (-) True G719151
TU816422 other downstream 3188180 49866630 ~ 49889252 (-) False LOC110530011
TU816366 other downstream 3239736 49785674 ~ 49837696 (-) True G718489
TU820029 other upstream 382669 53463182 ~ 53463764 (-) False LOC110529122
TU820769 other upstream 417635 53498148 ~ 53499730 (-) True G722459
TU820950 other upstream 722930 53803443 ~ 53856065 (-) True G722602
TU821019 other upstream 845715 53926228 ~ 53927959 (-) True G722670
TU821119 other upstream 1043866 54124379 ~ 54139341 (-) True G722761

Expression Profile