RNA id: TU833589


Basic Information

Item Value
RNA id TU833589
length 638
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G734050
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 63932609 ~ 63933246 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCTCTAAACACATTTTAAATCAACAAAATTTATTTAGGAATGTGTTAATAAAATCAAcattctagaagaaaaagaaacacacacctattgaggcgaggtgctggctagcggagtagaaaacttgaacattaaagagagccgcacactctaggagctcagatgcaaaaatgtaattaccaatgtttcgacagccaagctgtcttcatcagggtataatcacaaacactgcgggatgactcgtttatatagtgtcaaaagacacaggtgtctgtaatcatggccaagagtggcctaatatcattggttacttatcaaatattaaaatggcatacaaagaacggcatgcaaacaacaaatggatagcatactaTCATAAATTCATTTtcgactacacaagcttacaaacagttacaatggcaaagtcacaataatcacaataatggcttcagatcaaagtctactttgagaccgaagggagcaagggtcattaagttaaagatccaggcagcctctcgttttaactataaattatcaaggtcaccccctctcctagggagggtgacttgttcgatgccaatataatgCAGAGAGGAAATTTCCCCTTGAAAAAtagtttgccctacagccaattctgtcta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU833504 lncRNA downstream 131465 63800895 ~ 63801144 (-) True G733968
TU833503 lncRNA downstream 131819 63800469 ~ 63800790 (-) True G733967
TU833496 lncRNA downstream 140270 63792023 ~ 63792339 (-) True G733960
TU833495 lncRNA downstream 140673 63791672 ~ 63791936 (-) True G733959
TU833491 lncRNA downstream 144814 63787563 ~ 63787795 (-) True G733955
TU833798 lncRNA upstream 51271 63984517 ~ 64021810 (-) True G734246
TU833812 lncRNA upstream 93908 64027154 ~ 64027444 (-) True G734260
TU833819 lncRNA upstream 109993 64043239 ~ 64043553 (-) True G734266
TU833820 lncRNA upstream 111553 64044799 ~ 64045034 (-) True G734267
TU833823 lncRNA upstream 114258 64047504 ~ 64047706 (-) True G734270
XM_036985959.1 mRNA downstream 40136 63889677 ~ 63892473 (-) True klf17
XM_021613262.2 mRNA downstream 47214 63802841 ~ 63885395 (-) True slc6a9
XM_021613260.2 mRNA downstream 47215 63802841 ~ 63885394 (-) False slc6a9
XM_021613258.2 mRNA downstream 47216 63802841 ~ 63885393 (-) False slc6a9
XM_021613259.2 mRNA downstream 63745 63802841 ~ 63868864 (-) False slc6a9
XM_021613274.2 mRNA upstream 52083 63985329 ~ 64019271 (-) False LOC110530324
XM_036985960.1 mRNA upstream 52083 63985329 ~ 64157280 (-) False LOC110530324
XM_036985961.1 mRNA upstream 52083 63985329 ~ 64157280 (-) False LOC110530324
XM_036985962.1 mRNA upstream 52083 63985329 ~ 64157280 (-) False LOC110530324
XM_036985963.1 mRNA upstream 52083 63985329 ~ 64157280 (-) False LOC110530324
TU831229 other downstream 1747429 62180687 ~ 62185180 (-) True LOC110530961
TU831141 other downstream 1884490 62045035 ~ 62048119 (-) False G731764
TU825771 other downstream 6068732 57862738 ~ 57863877 (-) True LOC110530228
TU825774 other downstream 6085920 57820047 ~ 57846689 (-) True G726900
TU825750 other downstream 6121187 57805388 ~ 57811422 (-) True G726885
TU835604 other upstream 1057055 64990301 ~ 65040241 (-) True G735880
TU835971 other upstream 1584921 65518167 ~ 65528583 (-) True G736216
TU836724 other upstream 2167850 66101096 ~ 66101627 (-) True G736841
TU836773 other upstream 2260408 66193654 ~ 66209991 (-) False LOC110530385
TU837419 other upstream 2625950 66559196 ~ 66560517 (-) True G737449

Expression Profile