RNA id: TU841699



Basic Information


Item Value
RNA id TU841699
length 449
lncRNA type inter_gene
GC content 0.52
exon number 1
gene id G741368
representative True

Chromosome Information


Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 69999417 ~ 69999865 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


cagttgcacagggcggggtcgagacccagggtctcgagcttgatgacgagcttggagggtactatggtgttgaatgccgagctgtagtcgatgaacagcattctcacataggtattcctcttgtccagatgggttagggcagtgtgcagtgtagttgagattgcatcgtctgtggacctatttgggcggtaagcaaattggagtgggtctagggtgtcaggtagggtggaggtgatatggtccttgactagtctctcaaagcacttcatgatgacggatgtgagtgctacggggcggtagtcgtttagctcagttaccttagctttcttgggaacaggaacaatggtggccctcttgaagcatgtgggaacagcagactggtatagggattgattgaatatgtccgtaaacacaccggccagctggtctgtgcatgctctgagggcgcg

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU841697 lncRNA downstream 654 69998416 ~ 69998763 (-) True G741366
TU841696 lncRNA downstream 1489 69997664 ~ 69997928 (-) True G741365
TU841539 lncRNA downstream 153604 69845584 ~ 69845813 (-) True G741212
TU841538 lncRNA downstream 154386 69844758 ~ 69845031 (-) True G741211
TU841522 lncRNA downstream 187365 69811781 ~ 69812052 (-) True G741195
TU841724 lncRNA upstream 25656 70025521 ~ 70026115 (-) True G741393
TU841731 lncRNA upstream 34342 70034207 ~ 70034435 (-) True G741400
TU841737 lncRNA upstream 41187 70041052 ~ 70041283 (-) True G741406
TU841749 lncRNA upstream 48470 70048335 ~ 70048592 (-) True G741418
TU841751 lncRNA upstream 49878 70049743 ~ 70049974 (-) True G741420
XM_021613499.2 mRNA downstream 445727 69537168 ~ 69553690 (-) False LOC110530438
XM_036986068.1 mRNA downstream 445727 69537253 ~ 69553690 (-) True LOC110530438
XM_021613495.2 mRNA downstream 512283 69477306 ~ 69487134 (-) True LOC110530436
XM_036986849.1 mRNA downstream 525028 69461920 ~ 69474389 (-) True LOC118965618
XM_021613494.2 mRNA downstream 548994 69434542 ~ 69450423 (-) True si:ch73-40a17.3
XM_021613508.2 mRNA upstream 56638 70056503 ~ 70076393 (-) False LOC110530443
XM_021613509.2 mRNA upstream 56638 70056503 ~ 70076393 (-) False LOC110530443
XM_021613510.2 mRNA upstream 56638 70056503 ~ 70076393 (-) False LOC110530443
XM_021613511.2 mRNA upstream 56638 70056503 ~ 70076393 (-) False LOC110530443
XM_021613512.2 mRNA upstream 56638 70056503 ~ 70095132 (-) False LOC110530443
TU841504 other downstream 216123 69782289 ~ 69783294 (-) True G741177
TU841404 other downstream 271986 69725774 ~ 69727431 (-) True G741077
TU841403 other downstream 272038 69725774 ~ 69727379 (-) False G741077
TU841006 other downstream 568764 69408968 ~ 69430653 (-) False G740718
TU840819 other downstream 841691 69150343 ~ 69157726 (-) True igfbp1
TU842116 other upstream 151942 70151807 ~ 70160838 (-) True LOC110530971
TU842204 other upstream 199046 70198911 ~ 70200278 (-) True LOC110530449
TU842419 other upstream 519522 70519387 ~ 70525951 (-) False G742038
TU842800 other upstream 835493 70835358 ~ 70842457 (-) True G742383
TU843586 other upstream 1070769 71070634 ~ 71071082 (-) True G743076

Expression Profile