RNA id: TCONS_00035864


Basic Information

Item Value
RNA id TCONS_00035864
length 918
lncRNA type sense_overlapping
GC content 0.45
exon number 2
gene id XLOC_018201
representative True

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 33349174 ~ 33463368 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCGTCTCTCGACGAGGTTGTCAAAACAGCCGCACAATGTGCACTTTCATGTGCACAACTGGACCCTGTCGCCCCGACCGACAATCGCTTGTGTTCGCTGCACAAAGTGGCCTCTGTGTCGGCCGGGGCTCCTCCTTTGGCCCGGCGGCCGCTGTGGAGGTGATCGGGGGCCGCGTTCAGCATAGCGTGTCTGTTTGTGTGATTAATCACCGTGTAAAACTCCAGCGTATCCGTTTCGGTGGGAGCGAGGAGCCACGGGCGCCTCTCCGTTTATGCGTCATTGTGTCTAACGGTGCCCGGTAGCCGAGAGAGAGCAGAGGGCAAAAGTTTGAGCATATGGTTGAGATTAAGGCGCTAAAGAAACTGACTGATTCACATGATtgggatttgttttattttgagttCGCCTGATTACTGAATAAACGTCTTAAAAGTGATTGATCTTTTTTTAGGGGGGAATATAGGCCTATTCACTGAAGCCTTTTGTTCGCTTTAGCATGGTCCCCCAAGCGTTACTCCACATCCAGTGATAGTTGCATCCTTCATGTGTTTATATATTTGGTCCGTTTGGTTTGCGCATGCTGCCGACGTGAATGTAGATTCTGAAAGGGATGTCATCTCTTatgaaagaaacttacGTCATTTTGGAACACACTGGTGCTGGAtaaatagtaagtacattttcattttttaggaGTGCTATGGCTTTAGTGTTTTGTGTCTTCAAAGAGGCAGTTGTCATCAACCGACTATACAGTTTTAGACTAATTGAAAAGTATTTCAACTCAGACTTTCTGACTTGTAGATTGTTTATAGCTTCAGCCTTTTATTTCTGGCAGTTCtgatgaaagtacatttataaagATTATTTTCATGATGAAATTGTGTATAGGCCATCAAAAAAGCTGAGAAaacctac

Function

GO:

id name namespace
GO:0006400 tRNA modification biological_process
GO:0008033 tRNA processing biological_process

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDART00000162503

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00036884 lncRNA downstream 32210 33357974 ~ 33428878 (-) False XLOC_018201
TCONS_00036886 lncRNA downstream 32253 33427895 ~ 33428835 (-) False XLOC_018201
TCONS_00036883 lncRNA downstream 42075 33349174 ~ 33419013 (-) False XLOC_018201
TCONS_00036882 lncRNA downstream 167244 33230163 ~ 33293844 (-) True XLOC_018200
TCONS_00036881 lncRNA downstream 802826 32657086 ~ 32658262 (-) True XLOC_018197
TCONS_00036887 lncRNA upstream 245120 33708118 ~ 33711255 (-) True XLOC_018211
TCONS_00036888 lncRNA upstream 250542 33713540 ~ 33717068 (-) True XLOC_018212
TCONS_00036889 lncRNA upstream 257996 33720994 ~ 33721947 (-) False XLOC_018213
TCONS_00036890 lncRNA upstream 257996 33720994 ~ 33722205 (-) True XLOC_018213
TCONS_00036891 lncRNA upstream 262894 33725892 ~ 33728373 (-) True XLOC_018214
TCONS_00035861 mRNA downstream 286189 32838467 ~ 33174899 (-) False XLOC_018199
TCONS_00035862 mRNA downstream 480035 32962656 ~ 32981053 (-) True XLOC_018199
TCONS_00035858 mRNA downstream 708631 32656812 ~ 32752457 (-) False XLOC_018197
TCONS_00035860 mRNA downstream 791746 32666384 ~ 32669342 (-) True XLOC_018198
TCONS_00035859 mRNA downstream 802777 32656821 ~ 32658311 (-) False XLOC_018197
TCONS_00035865 mRNA upstream 4163 33467161 ~ 33487729 (-) False XLOC_018202
TCONS_00035867 mRNA upstream 30926 33493924 ~ 33497128 (-) True XLOC_018203
TCONS_00035868 mRNA upstream 36380 33499378 ~ 33512443 (-) False XLOC_018204
TCONS_00035869 mRNA upstream 36611 33499609 ~ 33512275 (-) False XLOC_018204
TCONS_00035870 mRNA upstream 40169 33503167 ~ 33507458 (-) True XLOC_018204
TCONS_00035856 other downstream 811129 32649843 ~ 32649959 (-) True XLOC_018196
TCONS_00035855 other downstream 1000697 32460275 ~ 32460391 (-) True XLOC_018195
TCONS_00035840 other downstream 1450089 32010010 ~ 32010999 (-) False XLOC_018186
TCONS_00035824 other downstream 2415883 31045075 ~ 31045205 (-) True XLOC_018178
TCONS_00035814 other downstream 3086182 30374686 ~ 30374906 (-) True XLOC_018169
TCONS_00035866 other upstream 8223 33471221 ~ 33475485 (-) True XLOC_018202
TCONS_00035876 other upstream 138415 33601413 ~ 33657569 (-) False XLOC_018209
TCONS_00035878 other upstream 193165 33656163 ~ 33686380 (-) False XLOC_018209
TCONS_00035879 other upstream 194336 33657334 ~ 33688599 (-) False XLOC_018209
TCONS_00035881 other upstream 238119 33701117 ~ 33701233 (-) True XLOC_018210

Expression Profile

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