Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00035870 |
| length | 676 |
| RNA type | mRNA |
| GC content | 0.56 |
| exon number | 5 |
| gene id | XLOC_018204 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007131.7 |
| NCBI id | CM002904.2 |
| chromosome length | 55201332 |
| location | 33499378 ~ 33512443 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0030198 | extracellular matrix organization | biological_process |
| GO:0031012 | extracellular matrix | cellular_component |
| GO:0004222 | metalloendopeptidase activity | molecular_function |
| GO:0004867 | serine-type endopeptidase inhibitor activity | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-030131-6023 | Predicted to enable metalloendopeptidase activity. Predicted to be involved in extracellular matrix organization. Predicted to be located in extracellular region. Predicted to be active in extracellular matrix. Orthologous to human PAPLN (papilin, proteoglycan like sulfated glycoprotein). |
| ensembl_id | ENSDART00000140287 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00036885 | lncRNA | downstream | 39799 | 33357974 ~ 33463368 (-) | False | XLOC_018201 |
| TCONS_00035864 | lncRNA | downstream | 40169 | 33461088 ~ 33462998 (-) | True | XLOC_018201 |
| TCONS_00036884 | lncRNA | downstream | 74289 | 33357974 ~ 33428878 (-) | False | XLOC_018201 |
| TCONS_00036886 | lncRNA | downstream | 74332 | 33427895 ~ 33428835 (-) | False | XLOC_018201 |
| TCONS_00036883 | lncRNA | downstream | 84154 | 33349174 ~ 33419013 (-) | False | XLOC_018201 |
| TCONS_00036887 | lncRNA | upstream | 200660 | 33708118 ~ 33711255 (-) | True | XLOC_018211 |
| TCONS_00036888 | lncRNA | upstream | 206082 | 33713540 ~ 33717068 (-) | True | XLOC_018212 |
| TCONS_00036889 | lncRNA | upstream | 213536 | 33720994 ~ 33721947 (-) | False | XLOC_018213 |
| TCONS_00036890 | lncRNA | upstream | 213536 | 33720994 ~ 33722205 (-) | True | XLOC_018213 |
| TCONS_00036891 | lncRNA | upstream | 218434 | 33725892 ~ 33728373 (-) | True | XLOC_018214 |
| TCONS_00035867 | mRNA | downstream | 6039 | 33493924 ~ 33497128 (-) | True | XLOC_018203 |
| TCONS_00035865 | mRNA | downstream | 15438 | 33467161 ~ 33487729 (-) | False | XLOC_018202 |
| TCONS_00035863 | mRNA | downstream | 40206 | 33370214 ~ 33462961 (-) | False | XLOC_018201 |
| TCONS_00035861 | mRNA | downstream | 328268 | 32838467 ~ 33174899 (-) | False | XLOC_018199 |
| TCONS_00035871 | mRNA | upstream | 6206 | 33513664 ~ 33515890 (-) | True | XLOC_018205 |
| TCONS_00035872 | mRNA | upstream | 47923 | 33555381 ~ 33556983 (-) | True | XLOC_018206 |
| TCONS_00035873 | mRNA | upstream | 56967 | 33564425 ~ 33566640 (-) | True | XLOC_018207 |
| TCONS_00035874 | mRNA | upstream | 63854 | 33571312 ~ 33583779 (-) | True | XLOC_018208 |
| TCONS_00035875 | mRNA | upstream | 93588 | 33601046 ~ 33705044 (-) | False | XLOC_018209 |
| TCONS_00035866 | other | downstream | 27682 | 33471221 ~ 33475485 (-) | True | XLOC_018202 |
| TCONS_00035856 | other | downstream | 853208 | 32649843 ~ 32649959 (-) | True | XLOC_018196 |
| TCONS_00035855 | other | downstream | 1042776 | 32460275 ~ 32460391 (-) | True | XLOC_018195 |
| TCONS_00035840 | other | downstream | 1492168 | 32010010 ~ 32010999 (-) | False | XLOC_018186 |
| TCONS_00035824 | other | downstream | 2457962 | 31045075 ~ 31045205 (-) | True | XLOC_018178 |
| TCONS_00035876 | other | upstream | 93955 | 33601413 ~ 33657569 (-) | False | XLOC_018209 |
| TCONS_00035878 | other | upstream | 148705 | 33656163 ~ 33686380 (-) | False | XLOC_018209 |
| TCONS_00035879 | other | upstream | 149876 | 33657334 ~ 33688599 (-) | False | XLOC_018209 |
| TCONS_00035881 | other | upstream | 193659 | 33701117 ~ 33701233 (-) | True | XLOC_018210 |
| TCONS_00035885 | other | upstream | 441184 | 33948642 ~ 33951690 (-) | False | XLOC_018218 |
