RNA id: TCONS_00035914


Basic Information

Item Value
RNA id TCONS_00035914
length 928
RNA type mRNA
GC content 0.54
exon number 7
gene id XLOC_018234
representative True

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 34737738 ~ 34754617 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

gtgttgccctaaaaaaaaaagtaaagcaatATCCGACTGCGCTGCTTgactatttgcaaaaaaaatctatCGCGTGTTCGACAaagCTGTTTTTTGTGCGGACTCAGTCAAAGCCGACTGTTTTAGCTGAGAGGACACAGTATGGCAGCGGTAGGATCCCGAGCAGGACTTGACACGATGGGCATTGACGGCCAGGATGGACTGGTCTACATGCAGTGTTGTGGGCAAGGAGAAGGGGTGCAGAAGAAGCTGAATGCAGGATCTGCCACCACAGACTGGTCTGTCGATGCCAACACACAGCAAACAAACCTAATGTCCTTCCCAAGGTCTTCCGGCATGGACTTACCTTACAGAAGTCCTGAATCAGTGGAGATGGATGAGATCATGGCTGCGATGGTGCTCACCAGTCTGTCCTGCAGTCCAGTGGTCCAAAGCCCCCCGCAAAAAGACCTCCTACCAGGGGACATGGAGTGTTGTGGAGGTGATCTATCTGACAGTGGCAGCAGTGGTTACTGGAGTTGGGACCATGGAAATGTAAGCCCAGCCCCGTCTCCATCGGTCAATGAGATGGACAGGAGCCCCGGCCGACCCACAGACGAGGGCCTGCACATGGAGCTGGACCAAGGTGCATGTGAGGAGCCTGAGGCCCGGAGGTGCAAGAGCTTGAGCCGGGGAGCATACAGGTGTTTGTGGCCGGGCTGTGGAAAAGTGCTGACATCGCGTGTCGGCATGAAGCGGCATATTCGCATTCTTCACCTCGGTGGAGGCTCAGAGCAGTCCCACAGAGAGGAAGACTTCTACTACACAGAGGTCTCCTCTGAAGATGAAGACACTGCACCTTCATCTCCCGCGCCTTCCTTCTCCAGTGGAGCCTGGACATCCTGCAGCTCCACACAAAGCCAGGATACAACAGTCCTGTCCAGTCCTC

Function

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0005634 nucleus cellular_component
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-041001-193 Predicted to enable DNA-binding transcription factor activity and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Is expressed in retinal photoreceptor layer. Orthologous to human ZNF395 (zinc finger protein 395).

Ensembl:

ensembl_id ENSDART00000152845

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00036898 lncRNA downstream 95246 34645947 ~ 34650661 (-) False XLOC_018231
TCONS_00035907 lncRNA downstream 95274 34647500 ~ 34650633 (-) True XLOC_018231
TCONS_00036897 lncRNA downstream 209888 34515508 ~ 34536019 (-) True XLOC_018230
TCONS_00036896 lncRNA downstream 243236 34501770 ~ 34502671 (-) True XLOC_018229
TCONS_00035900 lncRNA downstream 592906 34151733 ~ 34153001 (-) True XLOC_018225
TCONS_00035922 lncRNA upstream 241308 34991671 ~ 34994123 (-) True XLOC_018238
TCONS_00035930 lncRNA upstream 719063 35469426 ~ 35471079 (-) True XLOC_018242
TCONS_00035935 lncRNA upstream 784811 35535174 ~ 35536676 (-) True XLOC_018245
TCONS_00036486 lncRNA upstream 810294 35560657 ~ 35563832 (-) True XLOC_018248
TCONS_00036487 lncRNA upstream 1478065 36228428 ~ 36228747 (-) True XLOC_018254
TCONS_00035910 mRNA downstream 34379 34702410 ~ 34711528 (-) False XLOC_018233
TCONS_00035908 mRNA downstream 75671 34653916 ~ 34670236 (-) False XLOC_018232
TCONS_00035909 mRNA downstream 82698 34658555 ~ 34663209 (-) True XLOC_018232
TCONS_00035906 mRNA downstream 292284 34420623 ~ 34453623 (-) True XLOC_018228
TCONS_00035905 mRNA downstream 357576 34383196 ~ 34388331 (-) True XLOC_018227
TCONS_00035915 mRNA upstream 15820 34766183 ~ 34768301 (-) False XLOC_018235
TCONS_00035916 mRNA upstream 16048 34766411 ~ 34767472 (-) True XLOC_018235
TCONS_00035917 mRNA upstream 23283 34773646 ~ 34801181 (-) False XLOC_018236
TCONS_00035918 mRNA upstream 44279 34794642 ~ 34801181 (-) False XLOC_018236
TCONS_00035919 mRNA upstream 47464 34797827 ~ 34868814 (-) True XLOC_018236
TCONS_00035911 other downstream 39335 34703077 ~ 34706572 (-) True XLOC_018233
TCONS_00035885 other downstream 794217 33948642 ~ 33951690 (-) False XLOC_018218
TCONS_00035881 other downstream 1044674 33701117 ~ 33701233 (-) True XLOC_018210
TCONS_00035879 other downstream 1057308 33657334 ~ 33688599 (-) False XLOC_018209
TCONS_00035878 other downstream 1059527 33656163 ~ 33686380 (-) False XLOC_018209
TCONS_00035933 other upstream 760502 35510865 ~ 35510980 (-) True XLOC_018244
TCONS_00035936 other upstream 790919 35541282 ~ 35545194 (-) True XLOC_018246
TCONS_00035984 other upstream 3180324 37930687 ~ 37934315 (-) True XLOC_018273
TCONS_00035989 other upstream 3768334 38518697 ~ 38522649 (-) False XLOC_018280
TCONS_00036007 other upstream 4155168 38905531 ~ 38905613 (-) True XLOC_018288

Expression Profile

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