RNA id: XR_002474920.2



Basic Information


Item Value
RNA id XR_002474920.2
length 886
RNA type mRNA
GC content 0.46
exon number 3
gene id LOC110533022
representative False

Chromosome Information


Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 55472740 ~ 55482782 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


AAGGAAGAGGAAGAAATCAAAGAGCTCGTGGACAAGGGGCTCGtcagagaggtgggcatgggccccatcaagGTGGTAAAAGAGATAACAGATCCAGTCTACCTCAAAGCAGCTGCCTTGGATCCGGATTTTTCTCTGATGTGGGTGGAGCACCATGTGCTGGTCAAGGAGGAGGTCAAGGAGGAGGTGGCACAAAGAGTGAAAGAACTGATTCTGCAAGATGCTACAGGGACTGAGCAAGCTGTGCCTCTTGTTGATGAGGAAGAGTGAGAGGACCATAGTCTTGGACAAGAAGAAGGGCTGTTTGCAGCATGCTGTAAGAGGCAGAAGAAAGCTGTTGGGACCACTCCAGCACTACAGCTAAGTCACTACCTTGACAAATGCGAAGGACAGAATGCCCTCTTGTTCTGGGCAATGAACAGGAAGGCTCTTCCTTCACTGTCCCGAGTGGCCATCAGGGTCTTGGCAGTGCCTGCCTCCAGTGTTCCGGTGGAGCATGTCTTCATCCATGGTGGCATCATACTGCGGCCTCATCGTGCACAAATGACTGACAGACTTTTATCGAATTTGGTCTTTTGCAAATGCAATGCATCATAGGGCCCTGAGATAAGAGAAAAAATTCAACTGTTTatgcattatacacacacacatgtagtcTCCATGTTCAGGTTTTATCTCCCGTCTTTGGGATCTATATTTTTTTCTCAGACATTCATTGTTCAAATTGTAGGCCTCAGTTCAGTGTCAGTTGTTTAGATGTACCTTTAAATAAATGATTGTAACTTTATGGCAGGATTTTAGGTGTCTAgagtatatctggagagagagatagagggagagagagcactacaatattttgtttttgttgtcatattgatgtctttct

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU933387 lncRNA upstream 4839 55467699 ~ 55467901 (+) True G820838
TU933386 lncRNA upstream 5975 55465963 ~ 55466765 (+) True G820837
TU933380 lncRNA upstream 15870 55456579 ~ 55456870 (+) True G820831
TU933315 lncRNA upstream 146314 55326214 ~ 55326426 (+) True G820771
TU933313 lncRNA upstream 147688 55324832 ~ 55325052 (+) True G820769
TU933423 lncRNA downstream 133093 55615869 ~ 55616148 (+) True dlgap4a
TU933488 lncRNA downstream 134551 55617327 ~ 55617607 (+) True G820937
TU933865 lncRNA downstream 354647 55837423 ~ 55844030 (+) True G821275
TU933835 lncRNA downstream 366846 55849622 ~ 55853214 (+) True G821250
TU933954 lncRNA downstream 474592 55957368 ~ 55957642 (+) True G821355
XM_036988355.1 mRNA upstream 47174 55419323 ~ 55425566 (+) True LOC110532410
XM_021616291.2 mRNA upstream 62441 55375175 ~ 55410299 (+) True LOC110532409
XM_021616290.2 mRNA upstream 100153 55328112 ~ 55372587 (+) True LOC110532408
XM_036988353.1 mRNA upstream 248368 55217606 ~ 55224372 (+) False LOC110532406
XM_021616299.2 mRNA downstream 48257 55531033 ~ 55647541 (+) False dlgap4a
XM_036988357.1 mRNA downstream 165993 55648769 ~ 55673611 (+) False LOC110532413
XM_036988358.1 mRNA downstream 165993 55648769 ~ 55673611 (+) False LOC110532413
XM_036988360.1 mRNA downstream 165993 55648769 ~ 55673611 (+) False LOC110532413
XM_021616300.2 mRNA downstream 165993 55648769 ~ 55683707 (+) False LOC110532413
TU933208 other upstream 238942 55233258 ~ 55233798 (+) True G820665
TU932380 other upstream 745364 54726871 ~ 54727376 (+) True G819897
TU929242 other upstream 2745220 52726421 ~ 52727520 (+) True LOC110532368
TU929026 other upstream 3147100 52323271 ~ 52325640 (+) True LOC110532349
TU927907 other upstream 4126246 51345372 ~ 51346494 (+) True G815767
TU933425 other downstream 48261 55531037 ~ 55615401 (+) False dlgap4a
TU933495 other downstream 214864 55697640 ~ 55697978 (+) True G820944
TU933965 other downstream 491266 55974042 ~ 55975316 (+) True G821363
TU934014 other downstream 578930 56061706 ~ 56063655 (+) True G821409
TU934051 other downstream 636343 56119119 ~ 56124185 (+) True LOC110532426

Expression Profile