RNA id: TU933425



Basic Information


Item Value
RNA id TU933425
length 584
RNA type TUCP
GC content 0.54
exon number 2
gene id dlgap4a
representative False

Chromosome Information


Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 55531033 ~ 55647541 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TGAGACTCTGTGATGGGTAGTCTACCGCTGTGGGGTCCAATTTAGCATCGTTTATCCTTCGACACGCAGGGGGACACAACAGCGGAGGACAGAAAACAATGTTCATTCCATTAGACTGAGAAGGGCTGCCAATCTAAACCTGTGCGATATTTTAGATCAGCGCAGTTTACCTACTCATCAGTCATATTGTCGATAAAAAGGATATATATTTTTGGGACATGTAAGTCAAGTCTTGTGTGACCGACACCCACCGAACAGTCAAGGATGAAATAAGGATGAGCCCTCCAGGGCTGTAGACGCGCCCCAGCTGGAGACATGTTCTAAGAGCAGCAGCAGACCTGCACTGTGGCCACCATGAAAGGGTTAGGTGCCAATCGCAGCCGTCACCTGTCGGACTCCTGTGAGCCATCGGGGGGCCCCCAGAAGGCCCTGTACCCCTTGACCTCTGACCCCCATGGTCCCTTCCTCCTGAGCCCCACCATTAACCACTACGGCACCTTGGACCCCCAccaactccaccactaccagGCCTCCAACCCCCAACCCCTGCCTCCGGAGTGCCTACTGCCCCTGAACCAGATGTC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU933393 lncRNA upstream 48255 55472742 ~ 55482782 (+) True LOC110533022
TU933387 lncRNA upstream 63136 55467699 ~ 55467901 (+) True G820838
TU933386 lncRNA upstream 64272 55465963 ~ 55466765 (+) True G820837
TU933380 lncRNA upstream 74167 55456579 ~ 55456870 (+) True G820831
TU933315 lncRNA upstream 204611 55326214 ~ 55326426 (+) True G820771
TU933423 lncRNA downstream 468 55615869 ~ 55616148 (+) True dlgap4a
TU933488 lncRNA downstream 1926 55617327 ~ 55617607 (+) True G820937
TU933865 lncRNA downstream 222022 55837423 ~ 55844030 (+) True G821275
TU933835 lncRNA downstream 234221 55849622 ~ 55853214 (+) True G821250
TU933954 lncRNA downstream 341967 55957368 ~ 55957642 (+) True G821355
XR_002474920.2 mRNA upstream 48261 55472740 ~ 55482776 (+) False LOC110533022
XM_036988355.1 mRNA upstream 105471 55419323 ~ 55425566 (+) True LOC110532410
XM_021616291.2 mRNA upstream 120738 55375175 ~ 55410299 (+) True LOC110532409
XM_021616290.2 mRNA upstream 158450 55328112 ~ 55372587 (+) True LOC110532408
XM_036988353.1 mRNA upstream 306665 55217606 ~ 55224372 (+) False LOC110532406
XM_036988357.1 mRNA downstream 33368 55648769 ~ 55673611 (+) False LOC110532413
XM_036988358.1 mRNA downstream 33368 55648769 ~ 55673611 (+) False LOC110532413
XM_036988360.1 mRNA downstream 33368 55648769 ~ 55673611 (+) False LOC110532413
XM_021616300.2 mRNA downstream 33368 55648769 ~ 55683707 (+) False LOC110532413
XM_021616303.2 mRNA downstream 33369 55648770 ~ 55669452 (+) False LOC110532413
TU933208 other upstream 297239 55233258 ~ 55233798 (+) True G820665
TU932380 other upstream 803661 54726871 ~ 54727376 (+) True G819897
TU929242 other upstream 2803517 52726421 ~ 52727520 (+) True LOC110532368
TU929026 other upstream 3205397 52323271 ~ 52325640 (+) True LOC110532349
TU927907 other upstream 4184543 51345372 ~ 51346494 (+) True G815767
TU933495 other downstream 82239 55697640 ~ 55697978 (+) True G820944
TU933965 other downstream 358641 55974042 ~ 55975316 (+) True G821363
TU934014 other downstream 446305 56061706 ~ 56063655 (+) True G821409
TU934051 other downstream 503718 56119119 ~ 56124185 (+) True LOC110532426
TU934050 other downstream 511060 56126461 ~ 56132936 (+) True LOC110532427

Expression Profile