RNA id: TCONS_00003650


Basic Information

Item Value
RNA id TCONS_00003650
length 2315
RNA type mRNA
GC content 0.43
exon number 7
gene id XLOC_001833
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 3520256 ~ 3532997 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTTCATTCATTCCAAAACAGATATAAAACACATGAAGCTAACACTATTAGCCAAAAATGCTAAGCAACTTTTTACAGATTGTCTCCATTTTCATGCTGTTTCATGGTTGTTTCAGCACCAATGATATGAATTCTGACACTTACTGTATTTGGACGAGGTCTGTTTCAGGAGGGCGAACACAGTATGCGTTTCTCCAAAGGACTCAGACATCTCTTATCTTGTATGACAGCATCTGGAAGCAAAATAATAGGCTTTTTAGTTGTGTCAAAAGCAATGAGCAGTCTATTATTGACAGCTACATGTCCAGGTGTTTGGAGGACAGCTCTTTCTCACAGCTTCTGGATGAACGCTTTGACATTAGTGTGCTGACTGAAGCTGATGGCCCCTGTGAGGTTGCCGGTGTCACAGAGGAGTTTGCAGCGTCTGTACGGAGGGCCAGAGACCTGATGAGTGTTGAACCGGATGGATTCGTGGAGCAGGACAGTGACGTCAGCTCCATAAAGACACTGCAGCGCTCGAAACGAGCATGGATGATTCCTGGGACTCTGTGGTGTGGCTCTGGAAATAAAGCCACAGGATGGACTGACCTGGGCGTCTTTGAAGAAACGGATAAATGCTGCAGAGAACATGACCACTGCAAACACACCATTCCCTCCTTCTCGTACGACCATGGCGTCTTCAACACAAACCTCTTCACCTTATCACACTGTGACTGTGACAACAGGTTCCGCCGCTGTCTCCTGGGTGTTAATAATAGCATGTCCAACCTTGTGGGCTACGGGTTTTTCAACGTGCTAAAGATGAGCTGCTTTGAGTTCTCTCAGCGGACGCAGTGTGCGAAGAGAACATGGTGGGGCAGGTGTGTCATGTCTGAACTTGCTCAATATGCTGTGGTCAAAGATGCAGCAAACTACACCGACACACTCCCTGAACAAGAAATGGAGTCCTTGGAAACGAGTTTTCAGCAAGCAATCACCATTGGACAGAACCAAGTCACCAAAAACATGGAAGAATCGCTTATAATTCAATCCAAAGATTCCAGGAACGGCACTGAAGCGCTGAGTCCAGTTTCCACATCACCAGGGCCATCTGTTACAACACTGCTGCCCCGGAAATCTGAAGCTTCCGTCGTCCCAACATACACACCGAAGACAACACTCGCCCAAAATAAACCAGACAGCCCACAAGgcGAGTTTGAGATGTGTAACCTCTATAAGGACCTGGATTCATGCCATCTACAGATTCCGGCTTTACAGGAGAAATTTGGTCTGCTGAATCCTGACCGGAGAACCCTTTATCACTGCAACTGTACAGCCAGGCTTGTCCAAAAGATCGTATCCAAAGAACTGGATGAAACAGACCCTGTCCATTCACTGTTGATGGACTTTGTTTCACAATCCTGCTTCAGTCTTCCAAAGTTTGAGGACTGTCTCAATGGACAAAGTTGTTCAACCCAGCTCATCCAAAACTGGAGGACAGACATGGCGGGAGGGCGTCATCTAGTGGACTTCAAACGCAAACTCAAGAGGATGAACCTCAAGCGCTCCAAGAGAAAAGACTCTCCAGTCAGATTATATAAGAAATGCATCAGGATGCACACTAAACTGCACAGACCTCGAGTTCCTGAACGGAAACGGTCGTAAATACCATTCAACCTAACAAATCAGCAAAAACAATGTAGCAATGCAAATTATGAAACAGAACTCTTATGAAACAGAGCTTATGCACATTAGGGAGTCTGTTGTTTGTGTAACCTGTAAAAAAGTCTACGTTTAGCCATAAGGAGCGtgtgcaaaatatatttataataagaaGAACAGggttataatattatatttagccCAAATAGGTCAGAGTGTTACAGCTATCTCGTACGGTACCTCCAGTCACATGCTTAAGTGCAACTTAAACCTTCAAAGCCAGCGTCAAAGTTTGTTAAAGTAAGTTGCCATTTCCAACTCTCAAGATCAGTGCTTGAGAAATTATTTTATGCATGCTAACAGTTAGCCCAGAGAAAGTACAAACTTTATATAGCAGGACATTACAAAATAATTTTCATACCTCAAAATTTAGTGTCCCTTTTATATTTTTCATCTGAGGTAAATCTTTCCCGCTTCTTTTCTCAATGTAGAGCGGGATATAATTGCGCATGCGCAGAAAAAACTGCCTTAAATTTAAAGTGTTACAATATGTTTTAGTCTCTACTAACTTACCTAATATTGCACTATATGTGAATACATGCAAGTGAGTgttgtaaatgtatgtaaatttgtaaataatgtgtaaatctgtttgaataaaaactaaacatcttc

Function

GO:

id name namespace
GO:0006644 phospholipid metabolic process biological_process
GO:0050482 arachidonic acid secretion biological_process
GO:0005576 extracellular region cellular_component
GO:0004623 phospholipase A2 activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-051113-96 Predicted to enable phospholipase A2 activity. Predicted to act upstream of or within arachidonic acid secretion and phospholipid metabolic process. Predicted to be located in extracellular region. Orthologous to human PLA2G3 (phospholipase A2 group III).

Ensembl:

ensembl_id ENSDART00000003242

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005672 lncRNA upstream 178640 3336855 ~ 3341616 (+) True XLOC_001829
TCONS_00005671 lncRNA upstream 207818 3299884 ~ 3312438 (+) True XLOC_001828
TCONS_00005810 lncRNA upstream 250438 3262578 ~ 3269818 (+) True XLOC_001827
TCONS_00005670 lncRNA upstream 540752 2977535 ~ 2979504 (+) True XLOC_001823
TCONS_00005809 lncRNA upstream 1016214 2499533 ~ 2504042 (+) True XLOC_001807
TCONS_00005811 lncRNA downstream 324070 3857067 ~ 3857885 (+) True XLOC_001834
TCONS_00005812 lncRNA downstream 756708 4289705 ~ 4299850 (+) True XLOC_001839
TCONS_00005813 lncRNA downstream 781966 4314963 ~ 4318863 (+) True XLOC_001840
TCONS_00005814 lncRNA downstream 802195 4335192 ~ 4341646 (+) True XLOC_001841
TCONS_00005673 lncRNA downstream 1276886 4809883 ~ 4810251 (+) True XLOC_001845
TCONS_00003649 mRNA upstream 9380 3507861 ~ 3510876 (+) True XLOC_001832
TCONS_00003648 mRNA upstream 64617 3430431 ~ 3455639 (+) True XLOC_001831
TCONS_00003647 mRNA upstream 67581 3428194 ~ 3452675 (+) False XLOC_001831
TCONS_00003645 mRNA upstream 161067 3336772 ~ 3359189 (+) False XLOC_001829
TCONS_00003644 mRNA upstream 197918 3299829 ~ 3322338 (+) False XLOC_001828
TCONS_00003652 mRNA downstream 342719 3875716 ~ 4039786 (+) False XLOC_001835
TCONS_00003651 mRNA downstream 342719 3875716 ~ 4039786 (+) False XLOC_001835
TCONS_00003653 mRNA downstream 432568 3965565 ~ 4039786 (+) True XLOC_001835
TCONS_00003654 mRNA downstream 513451 4046448 ~ 4080048 (+) False XLOC_001836
TCONS_00003655 mRNA downstream 513451 4046448 ~ 4085216 (+) True XLOC_001836
TCONS_00003646 other upstream 111356 3408783 ~ 3408900 (+) True XLOC_001830
TCONS_00003633 other upstream 493733 2985044 ~ 3026523 (+) True XLOC_001822
TCONS_00003616 other upstream 831575 2688565 ~ 2688681 (+) True XLOC_001815
TCONS_00003605 other upstream 1252899 2175583 ~ 2267357 (+) False XLOC_001805
TCONS_00003597 other upstream 1855218 1664922 ~ 1665038 (+) True XLOC_001797
TCONS_00003658 other downstream 960280 4493277 ~ 4493358 (+) True XLOC_001842
TCONS_00003668 other downstream 1453053 4986050 ~ 4987483 (+) True XLOC_001850
TCONS_00003675 other downstream 1602845 5135842 ~ 5147582 (+) True XLOC_001854
TCONS_00003679 other downstream 1618352 5151349 ~ 5152401 (+) True XLOC_001855
TCONS_00003693 other downstream 2211926 5744923 ~ 5769612 (+) False XLOC_001866

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000168_01110611_01115503.mRNA True 2501 mRNA 0.42 7 CI01000168 1109835 ~ 1115623 (-)