RNA id: CI01000168_01110611_01115503.mRNA


Basic Information

Item Value
RNA id CI01000168_01110611_01115503.mRNA
length 2501
RNA type mRNA
GC content 0.42
exon number 7
gene id CI01000168_01110611_01115503
representative True

Chromosome Information

Item Value
chromosome id CI01000168
NCBI id null
chromosome length 1293618
location 1109835 ~ 1115623 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGAGCTGAGGGGTTAAAAACCCAGTTACCCTGCAGCACCTCTGGCTATTTATTCATTCAAGTGCAAATTTGACTTAAAAATACACACAAGTGTAGTGCAATTATTCCGTTTGCCATAAAAATGCAAAGCAGCCACCTTTTAAAGGCAGTTCTGTGCCTTTTCATGCTGTTTCATGCTTGTTTCAGTGCTGACAATTTTAAATCGAGTACTTACTGTATTTGGACCAGATCCACTTCAGGTGGGCAAACACAGTATGCATTTCTCCGGAGAACTCAGACATCTCTTCTCTTGTTTGACAGCATCTGGAACAAAAACAACAGCCTTTTTAGTTGCATAACAAGTGATGAGCAATCTGTTATTGAGAGTTACCTGTCCAGGTGTTGGGAAGACAGCTCTTTCTCAGAGACCCTTGATGCACGCTTTGACATCAGTCAGCTGATTGAACCTGATGGCCCCTGTGAGGCTGCTGGTATTACGGAGGAATTTACAGCATCCGTACGAAGGGCCAGAGACCTAAAGAGTGTTAAACCCGATGGATCCATGTACCAGGATAGTGGAGAAAGTTCCAGACAGACACTTCACCGATCAAAGCGCTCGTGGATGATTCCAGGGACTCTGTGGTGTGGCTCGGGAAATAAGGCTACTGGCTTTACTGACCTGGGTATCTTTGAGGAAACCGATAAATGCTGCAGAGAACATGACCACTGTAAAGACACCATCGACTCTTTTTCATACAACTATGGTGTCTTCAACACAAATATCTTCACTTTATCACACTGCGATTGTGACAACAGGTTCCGCCGCTGTCTCCTGGGTGTTAATAATACCATGTCCAACCTTGTGGGCTACGGATACTTCAACGTGCTAAAGATGCGCTGCTTCGAGTTTTCTCAACGGATGCAGTGTGCGAAGAGAACGTGGTGTGTAAATTCAGAACTTGCTCAATACGCCGTGGTCAAAGACGCAGCAAACTACACCGACACGCTCCCTGAACAAGACATGGAGACTCTGGAAATGAGTTTCCATCAAGCAATCACTTTAGGACAAAACCAGGTCACCAAAAACATGGAAGAATCGCTTATCATGCAATCCAAAGATTCCAAGAGCAGCACTGAAGAGCCGAGTCCAGTTTCTACATCATCACCATGGCCATCTGTTACAACGCTGCTGTCCCGGAAATCTGAAGCTTCCGTAGTCACAACATACGCACCAAAGACAACAATCCCCCAAAATAAACCAGACAGACAACATCAAGGCAAGTTTGAGATGTGTGGCCTCTACAGGGATCTGGATTCATGCCATCTACAGATCCCTGCTTTACAAGAGAAATTCGGTTTACGAAACCCTGACCTGAGAACCCTTTATCACTGTAACTGTACTGCCAGGCTCGTCCAAAAGATCTTGTCGAAAGAACTGGATGAAACTGACCCTGTGCATTTGCTGTTGATGGACTTTGTGTCACAATCCTGTTTCACCCTACCACAGACTGAGAACTGTCTCAGTGGAAAAAGTTGCTCAACCCATCCACCAGAAGCACAGCTCATCCAACACTGGAGGAAAGACGTGGCAAGTGGACGACATCTAGTGGACTTCAAGCGCAAACTCAAGAGGATGAACCTCAAGCGCTCTAAGAGAAAAGACTCTCCAGTCAGATTATATAAGAAATGCATCAGGATGCACACTAAACGGCAGAGACCTCGAGTTCCTGAACGGAAACTGTCATAAAGCCCATTTTAACTCAACAAAGCAGAACAAAACTTGCAATGGGAATGGGGGAAACGTTTTTCTTCATAACTCACAACCTGCAAAAAATCTACATTTTGGTGTAAAGAATTTGTGCTAAAATAGTACAGTGAATATATTTATATCGAGAAACACAGGGTTATAGTCGGCTATTACATTTAGCCTAATAGGTCAGAGTGTTACGGTTACCTCGTTATGGGGTAATTGTTATTTTACAATAGCTGCAAGGAATTATGTGCATTTAAAGCAAAATTGTGAAATCTGTCTACATTAATAATTGGAAATGGATATTCTGCCACACACTTTAGTTAATGCATCTTAAAAATTCAAAAGCTATAGAATTTTCTTTCATAGCTATTTTTAGAGCCTCAACCTCACAGCTATGCTAAGATCGACGAGCTAGCCATAGATTTCAATCAAGTCGAACTTTACTCCACAATCCAGAGATAAACTAGATATAAGTTTGAATTCAAACCCATGCGAACTTTATACAGCAGTATTGAACATCCCAAAATCATTTTCATACCTCAAAATCTGTTTTCCGTTATGTTTTCCTCCTGAGGCGCAATTCCCGCTTATTCTCCTCAGGTAGAGCGGCATGCAATTGCGCATGCGCCGAAATGTCACCACTCTTGAGGATTTACAATATGTTTTGGATTCTGCTACCTAATATTTGCACTATATGTTAATTAATGCAACAAGCGAGTGTTGCAAATGTATGTACATTTGTAAATAACATGTAAATGAACTTTAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU423638 lncRNA downstream 66154 1042636 ~ 1043681 (-) True G370979
TU423640 lncRNA downstream 88940 1015060 ~ 1020895 (-) True G370981
TU423645 lncRNA downstream 180331 922253 ~ 929504 (-) True G370986
TU423627 lncRNA downstream 338582 770590 ~ 771253 (-) True G370968
TU423636 lncRNA downstream 354536 750495 ~ 755299 (-) True G370977
TU423594 lncRNA upstream 46503 1162126 ~ 1163202 (-) False G370950
TU423596 lncRNA upstream 46503 1162126 ~ 1167426 (-) False G370950
TU423598 lncRNA upstream 47133 1162756 ~ 1167426 (-) True G370950
TU423725 lncRNA upstream 145939 1261562 ~ 1281486 (-) True G371046
CI01000168_01097284_01099844.mRNA mRNA downstream 9991 1097094 ~ 1099844 (-) True CI01000168_01097284_01099844
CI01000168_01023228_01030414.mRNA mRNA downstream 78922 1022405 ~ 1030913 (-) True CI01000168_01023228_01030414
CI01000168_00969712_01008179.mRNA mRNA downstream 100065 969572 ~ 1009770 (-) True CI01000168_00969712_01008179
CI01000168_00934568_00949104.mRNA mRNA downstream 160731 934230 ~ 949104 (-) True CI01000168_00934568_00949104
CI01000168_00869412_00895047.mRNA mRNA downstream 214788 869325 ~ 895047 (-) True CI01000168_00869412_00895047
CI01000168_01121464_01135373.mRNA mRNA upstream 5134 1120757 ~ 1135373 (-) True CI01000168_01121464_01135373
CI01000168_01151161_01160955.mRNA mRNA upstream 35346 1150969 ~ 1160955 (-) True CI01000168_01151161_01160955
CI01000168_01202307_01215499.mRNA mRNA upstream 86168 1201791 ~ 1215499 (-) True CI01000168_01202307_01215499
CI01000168_01222730_01228035.mRNA mRNA upstream 106862 1222485 ~ 1228035 (-) True CI01000168_01222730_01228035
CI01000168_01250022_01255577.mRNA mRNA upstream 134349 1249972 ~ 1255577 (-) True CI01000168_01250022_01255577
TU423608 other downstream 287814 818571 ~ 822021 (-) True G370953

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00003650 True 2315 mRNA 0.43 7 NC_007121.7 3520256 ~ 3532997 (+)