RNA id: TCONS_00037009


Basic Information

Item Value
RNA id TCONS_00037009
length 2752
lncRNA type antisense_over
GC content 0.34
exon number 3
gene id XLOC_018481
representative True

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 52541466 ~ 52544754 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

aatttattatataattaacacTCTTTAAATCCATGTGCACAAAAGAATGATTTCCTGTGAAGAACATGAACAGCTGTCATTCTTATAAAGAAGGTCCCAGTggttaattacattaataatttaatattattatatatttattcattatatgacAGTGCAAAAGTGTAACAGCTGACCCCAGTCCTGTCTGTTATTATGTGTACTGTTCCTTTAAGACTATTCCATTTGACACACCATACACAAGCAATTCTCATTGCACCATTTGATGTTTCATTTTTGTACTTTAAAAGTAATTATCGAGTCATTTAGCACCAGAGATCAACATTCAGAAACACAATGAGTGTCTAATATGCATAAAGACGTccaggaggaccaccagaacgtggttgagaaacactgaaaaaAGACATAAGTaagttttaaagggacagttgacCCTAATATTAAAATTAGCCCATAATTTACTCCCCATTTTGTGCTATTTTTCTATTAGACGAACATGGTGTAGTTTTAAATTTGATCCTGGCTCTTCATGCTGTATAAAGtttttggacttttattttgaagctttcaaaagcacaaccattttttttttggccaaactAACTCATACTCTGTGCTATAAAACAGATCAACGTGtttgtgtaataaaatatttcaaatttttaaatgataaactgCAAACAATCACTTcatgtatattatattaaatatatattccgtatatcagtgtttctcaaccacgttcctggaggaccaccagcactgcatgttttggatgtctcctttgtcacacccaTTCCAGGTCTTTCAGTTtctgctgatgatctgaatcaggtgtggtTGGTTAAagagatatggaaaatgtgcagagctggtggtcctccatgaacgtggttgagaaacacttaaGACAGACATAAGTGGGATTTAAAGGCATAGCTCACCCCAAAATTTAAATGAGCCCaaaatttactctccctcaagccATCCTCAGTCTAAATGCTTCAGACAAACACAGGAGAAGTTTAAAATGTTATCCTGGCTCTTCATGCTGTATAAAGTGGTTTTgttagtgacttttattttgaattaacaaattacttcatattaaatatataatccGTATAAGTgattctcaaccacattcctggaggaccaccagcactgcaggTTTTGGATATCTCCTTtatcattacaggtctttcagtctctgttaatgagctgatgatctgaatctggtgtgtttggttaaggagatacggagaatgtgcagagctggtggtccttcaggaacgtggttgagaaacactgaaataAGACATAAGTgggttttaaagggacagttcactctaATATTACAATTAGCCCATAATTTACTCctccgtttgtttgtttttttgttagatGATCACAGTCGGAGTAGTTTTTAAATTGTACTCTGGCTCTTCATGCTGTATAAAGTTGTTGGttagggacttttattttgaagctttcaaAAACGCATCAATTTGTCGACAAACGAACCCATACTCTGTCTTATAAagcagattttgtttttgttataaaaatatttctaaGTTTTAAATGATAAACTGCAAACAATCACTTcatgtatattatattaaatatatattccgtatatcagtgtttctcaaccatgttcctggaggaccaccagcactgcgtTTTTtttgatgtctcctttgtctgtcacacccattccaggtctttcagtctttgctgatgatctgaatcaggtgtgtttggttaaggagatatggagaatgtgcagagctggtggtcctcaaggaatgtggttgagaaacacttaaAATAAGACATAAGTGggatttaaaggcatagttcaccacaaaatttAAATCAGCCTATAATTTACTCTCTCTCAAGCCATCCTCTGCTTATACACTTCTTATTCATAAGTGTCAAGAGTTTTTAATGTTATCCTGCCTCTTCATACTGTATACAGTTGTTGggtagtgacttttattttgaagctttctAAAGCACATCAATTTATTGCCAAAATAACCCACACTCTGTGTTATAAAACAGATCTATGTGTTTTTGTAACACAAATATTCCTAATTTTTGAACTCTAAGCATTCGCTTCTTGTAGCATTCTAACGCAGTATATGACGGGTCGACGCGTGTGTGCAGCTTTATTAAGAGTGATACACTGTCTAACATTATACAGTAATGCCAAGCCGACCAGTTTACTTGTTGGGCGTCATCTTTAGGTGGTAAACAAACTGTGTGGGAAATGGTTCCTGACAGATGTGTCTATTCCTGGAGCTTGCATCTTACGTCGAGTCAGACGTTTCTAGTGCTATAAATAGGCGATTACATTTGTGAAAGAATGTCATTATCCAGACTATATAACCTTAATCATAGTgcatagtgtgtgtgtttaaataaataaataaacatttatacattcaGTATAATTTAGATTcgatcattttattttatctgactttctttaataaatgtaataaccTTGTCATAGAAATCTCTGACTTGATGCGAGACACATTCAAAGGAAAGGGAGTgactgcaatttattttttaataaataatacagcataTTTCCAAATCCAAATCCAATTCTAGTAGGTGGCAGTAATTTAAAccgcaaaacaataataaaactacataaatcaagaagaaaaagaagattcAGGGGGTTTGGTATtgagtttataatttaatgattaaaaaattataaata

Function

GO:

id name namespace
GO:0006811 ion transport biological_process
GO:1901505 carbohydrate derivative transmembrane transporter activity molecular_function
GO:0030234 enzyme regulator activity molecular_function
GO:0015932 nucleobase-containing compound transmembrane transporter activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00037004 lncRNA downstream 627193 51910775 ~ 51914273 (-) True XLOC_018474
TCONS_00037003 lncRNA downstream 709725 51824017 ~ 51831741 (-) True XLOC_018473
TCONS_00037002 lncRNA downstream 719008 51807752 ~ 51822458 (-) False XLOC_018473
TCONS_00037001 lncRNA downstream 899118 51619897 ~ 51642348 (-) True XLOC_018467
TCONS_00036274 lncRNA downstream 1164012 51370192 ~ 51377454 (-) True XLOC_018464
TCONS_00037010 lncRNA upstream 108746 52653500 ~ 52654969 (-) True XLOC_018486
TCONS_00036517 lncRNA upstream 128354 52673108 ~ 52676467 (-) False XLOC_018488
TCONS_00036518 lncRNA upstream 129251 52674005 ~ 52676422 (-) False XLOC_018488
TCONS_00036519 lncRNA upstream 129331 52674085 ~ 52676410 (-) False XLOC_018488
TCONS_00036520 lncRNA upstream 129441 52674195 ~ 52676410 (-) True XLOC_018488
TCONS_00036295 mRNA downstream 202656 52332972 ~ 52338810 (-) False XLOC_018480
TCONS_00036296 mRNA downstream 202684 52332979 ~ 52338782 (-) True XLOC_018480
TCONS_00036294 mRNA downstream 227167 52273446 ~ 52314299 (-) True XLOC_018479
TCONS_00036292 mRNA downstream 270204 52233981 ~ 52271262 (-) False XLOC_018478
TCONS_00036293 mRNA downstream 270451 52234000 ~ 52271015 (-) True XLOC_018478
TCONS_00036298 mRNA upstream 55205 52599959 ~ 52603094 (-) False XLOC_018482
TCONS_00036297 mRNA upstream 55205 52599959 ~ 52603094 (-) True XLOC_018482
TCONS_00036300 mRNA upstream 68267 52613021 ~ 52616333 (-) False XLOC_018483
TCONS_00036299 mRNA upstream 68267 52613021 ~ 52616333 (-) True XLOC_018483
TCONS_00036302 mRNA upstream 84121 52628875 ~ 52631998 (-) False XLOC_018484
TCONS_00036289 other downstream 397161 52144191 ~ 52144305 (-) True XLOC_018476
TCONS_00036283 other downstream 792298 51748497 ~ 51749168 (-) True XLOC_018472
TCONS_00036281 other downstream 813637 51700633 ~ 51727829 (-) False XLOC_018471
TCONS_00036263 other downstream 1354901 51178311 ~ 51186565 (-) True XLOC_018458
TCONS_00036258 other downstream 2180291 50361059 ~ 50361175 (-) True XLOC_018455
TCONS_00036308 other upstream 141475 52686229 ~ 52691004 (-) False XLOC_018489
TCONS_00036307 other upstream 141475 52686229 ~ 52691004 (-) True XLOC_018489
TCONS_00036312 other upstream 282256 52827010 ~ 52827126 (-) True XLOC_018493
TCONS_00036326 other upstream 863530 53408284 ~ 53435476 (-) False XLOC_018503
TCONS_00036327 other upstream 863825 53408579 ~ 53435393 (-) False XLOC_018503

Expression Profile

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