RNA id: TCONS_00036517


Basic Information

Item Value
RNA id TCONS_00036517
length 290
lncRNA type intronic
GC content 0.42
exon number 3
gene id XLOC_018488
representative False

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 52673108 ~ 52676467 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

accGCATCTTTAGGACCCTAGTTTTTTGTGACAGCGTCACCTGTCGGATTGGATCATGGATGCGCTAATGGACGACACGGATGACAAGGAAAGTgcCATCGTACATCCTCTGGGTGTCTTGAGGAGCTGGTCTTTGGATGATGCTGAGCAGGTCTTTCTCTCTGGTAAAGATTATCATTACAGgaGCTAAAGTCTACAGCCAGTTTGAATGCAGCAACTGAATAAACAGTGGGGTCATTTTTGtggttgaattgcattaataaaaataaaagtgtggataattatataaa

Function

GO:

id name namespace
GO:0042572 retinol metabolic process biological_process
GO:0044424 obsolete intracellular part cellular_component
GO:0005622 intracellular anatomical structure cellular_component

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00037010 lncRNA downstream 18139 52653500 ~ 52654969 (-) True XLOC_018486
TCONS_00037009 lncRNA downstream 128354 52541466 ~ 52544754 (-) True XLOC_018481
TCONS_00037008 lncRNA downstream 128377 52541466 ~ 52544731 (-) False XLOC_018481
TCONS_00037007 lncRNA downstream 128434 52541466 ~ 52544674 (-) False XLOC_018481
TCONS_00037006 lncRNA downstream 128435 52541466 ~ 52544673 (-) False XLOC_018481
TCONS_00037011 lncRNA upstream 142340 52818807 ~ 52819616 (-) True XLOC_018491
TCONS_00037012 lncRNA upstream 297393 52973860 ~ 52995339 (-) False XLOC_018498
TCONS_00036521 lncRNA upstream 297393 52973860 ~ 52995339 (-) True XLOC_018498
TCONS_00036522 lncRNA upstream 611406 53287873 ~ 53292515 (-) True XLOC_018501
TCONS_00036329 lncRNA upstream 745683 53422150 ~ 53435452 (-) True XLOC_018503
TCONS_00036306 mRNA downstream 6958 52663031 ~ 52666150 (-) False XLOC_018487
TCONS_00036305 mRNA downstream 6958 52663031 ~ 52666150 (-) True XLOC_018487
TCONS_00036304 mRNA downstream 30604 52639377 ~ 52642504 (-) False XLOC_018485
TCONS_00036303 mRNA downstream 30604 52639377 ~ 52642504 (-) True XLOC_018485
TCONS_00036302 mRNA downstream 41110 52628875 ~ 52631998 (-) False XLOC_018484
TCONS_00036310 mRNA upstream 25545 52702012 ~ 52705325 (-) False XLOC_018490
TCONS_00036309 mRNA upstream 25545 52702012 ~ 52705325 (-) True XLOC_018490
TCONS_00036311 mRNA upstream 148748 52825215 ~ 52846212 (-) True XLOC_018492
TCONS_00036313 mRNA upstream 175326 52851793 ~ 52882881 (-) True XLOC_018494
TCONS_00036314 mRNA upstream 210460 52886927 ~ 52902693 (-) False XLOC_018495
TCONS_00036289 other downstream 528803 52144191 ~ 52144305 (-) True XLOC_018476
TCONS_00036283 other downstream 923940 51748497 ~ 51749168 (-) True XLOC_018472
TCONS_00036281 other downstream 945279 51700633 ~ 51727829 (-) False XLOC_018471
TCONS_00036263 other downstream 1486543 51178311 ~ 51186565 (-) True XLOC_018458
TCONS_00036258 other downstream 2311933 50361059 ~ 50361175 (-) True XLOC_018455
TCONS_00036308 other upstream 9762 52686229 ~ 52691004 (-) False XLOC_018489
TCONS_00036307 other upstream 9762 52686229 ~ 52691004 (-) True XLOC_018489
TCONS_00036312 other upstream 150543 52827010 ~ 52827126 (-) True XLOC_018493
TCONS_00036326 other upstream 731817 53408284 ~ 53435476 (-) False XLOC_018503
TCONS_00036327 other upstream 732112 53408579 ~ 53435393 (-) False XLOC_018503

Expression Profile

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