RNA id: TCONS_00003681


Basic Information

Item Value
RNA id TCONS_00003681
length 1610
RNA type mRNA
GC content 0.45
exon number 4
gene id XLOC_001856
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 5159475 ~ 5221537 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACAGAATCTTCTGGTGTCCTGCAGGTCTGCTAATTGAGCGGTGCCGTAAACAAGCTTCCAGTCAGGATCTGTTCTGGCGTTCTTATTGCTGCCTGAATCCAGCACCTCAGACTGAACATCTCCGCTTTCAGCACTGACTGGACCTTCCAAACGTGCCCTGTCCAGACTCCCAGAGCCCCCGCGGGCCCACGGGCACAGCCGCACTTCAGGACTGTCTGCTAGTCATGAGTGAATTCTGGTTGTGCTTCAACTGCTGTATCGCCGAGCAGCCGCAGCCGAAGAGGCGGAGACGTATAGATCGCAGTATGATTGGCGAGCCAACCAATTTTGTCCACACGGCCCATGTAGGCTCTGGAGATCTCTTCACTGGCATGAACTCTGTAAACTCCATTCAGAACCAAATGCAGTCGAAAGGAGGGTATGGAGGAGAGGCGATGTCTGTTAATGTACAGATGCAGCTGGTGGATACAAAAGCAGGATAATGTGTGCTGTTGGAAGGGGTTCCACGATGTGCATTTTCTGCTCAGCGGTTCCCCTCCAACATCTTCCCATGTGCCCTCAATGGCAACTTTTCACCTCATTCTTCTACCCAGCAAACACATGGACAGTTGTGCACTCCATGGTAAAGAGGTCGTCCTGGCCATCGGACATCAGGACGCCACAGCGCTTCAGTGTTGTGTCCGTTTCTGCTCCATAACAGACGTTCGCTCGCATGCCCTCTCAACACTCACCAGCCTACAAGTGCAACGTGTGTCCCTGCTTTCTCCTGTGGTTTGCCGTAAACTCTCGCTTTTTCCATCAtgcgtgttttatttttgtgGGTCCAGACTGATGAGAACAGGGTCGGTTCTCATTCGCTTGCCGTGAAaagactgcttttttttttttggtttcaatAAATCAACACGGAGCCGACGACAATGTTTGTAAAGGAAAGTGCAGTGCCAAAACTGCTCAGTGCAATGGAAAGTACTTTGTGTTTCAGCAAGAGCACAACAAATGCCATTTTTTTTAAGGAAGCGTGATTCTTGCTttgctgtttacagtgtctgaTTTGCAATTCCCGTTTCTTTTCCCTTCTTGTTTTAGAGTTCAAATCTGATGTTGAAAGGCATGAGCGGCATTTCACCCTCTGCTGTGTCGATGTACATCCGTAACTTGACGTGAAGCAACTCGAGCTATAGATAGTGTCCAGATAAAATGTATACAAAGATTTTGTTTAGGGCTTTTTATTGATGTAGTCATTATGAGCTATGGGGCTTTTCAATGAATAAGGTAAGACACCAGTGACAGGGTTTTTTTAACCGCACCCAAGTAGCATGGCTGtaaaatattgtacattttataaGCCTGTCTCTACACTGCAATGTTGCGATTCTGATTTTGTCCTCTcgtgtggcacagatcggatatggcccacacacagttagagtcagaattattagatctcttgtgaatagtttttttctttttctaaatatttccgaaatgatgtttaacagagcaaggcatttttcacagtatttcctataatagtttttcttctggaaaaagtcttatttgttttattttggatagaataaaagcagtttttaattttttaaaaccca

Function

GO:

id name namespace
GO:0035023 regulation of Rho protein signal transduction biological_process
GO:0009966 regulation of signal transduction biological_process
GO:0008360 regulation of cell shape biological_process
GO:0005856 cytoskeleton cellular_component
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0005737 cytoplasm cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-080204-45 Predicted to be involved in regulation of signal transduction. Predicted to act upstream of or within regulation of Rho protein signal transduction and regulation of cell shape. Predicted to be located in cytoplasm; cytoskeleton; and membrane. Predicted to be active in plasma membrane. Orthologous to human CDC42SE2 (CDC42 small effector 2).

Ensembl:

ensembl_id ENSDART00000165018

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00003678 lncRNA upstream 51131 5149469 ~ 5152401 (+) False XLOC_001855
TCONS_00003677 lncRNA upstream 51486 5149380 ~ 5152046 (+) False XLOC_001855
TCONS_00005674 lncRNA upstream 211494 4987766 ~ 4992038 (+) False XLOC_001851
TCONS_00003667 lncRNA upstream 238422 4964510 ~ 4965110 (+) True XLOC_001849
TCONS_00003665 lncRNA upstream 240232 4962575 ~ 4963300 (+) True XLOC_001848
TCONS_00005675 lncRNA downstream 10790 5232327 ~ 5234250 (+) True XLOC_001857
TCONS_00005817 lncRNA downstream 305653 5527190 ~ 5543141 (+) False XLOC_001863
TCONS_00005816 lncRNA downstream 305653 5527190 ~ 5543141 (+) False XLOC_001863
TCONS_00003688 lncRNA downstream 308197 5529734 ~ 5543090 (+) True XLOC_001863
TCONS_00005676 lncRNA downstream 366423 5587960 ~ 5588230 (+) True XLOC_001864
TCONS_00003676 mRNA upstream 46733 5149359 ~ 5156799 (+) False XLOC_001855
TCONS_00003674 mRNA upstream 55978 5135842 ~ 5147554 (+) False XLOC_001854
TCONS_00003673 mRNA upstream 59244 5135842 ~ 5144288 (+) False XLOC_001854
TCONS_00003672 mRNA upstream 113140 5060261 ~ 5090392 (+) True XLOC_001853
TCONS_00003671 mRNA upstream 113322 5060191 ~ 5090210 (+) False XLOC_001853
TCONS_00003682 mRNA downstream 12790 5234327 ~ 5265160 (+) False XLOC_001858
TCONS_00003683 mRNA downstream 12807 5234344 ~ 5265151 (+) True XLOC_001858
TCONS_00003684 mRNA downstream 46517 5268054 ~ 5407509 (+) True XLOC_001859
TCONS_00003685 mRNA downstream 187971 5409508 ~ 5410985 (+) True XLOC_001860
TCONS_00003686 mRNA downstream 192687 5414224 ~ 5419256 (+) True XLOC_001861
TCONS_00003679 other upstream 51131 5151349 ~ 5152401 (+) True XLOC_001855
TCONS_00003675 other upstream 55950 5135842 ~ 5147582 (+) True XLOC_001854
TCONS_00003668 other upstream 216049 4986050 ~ 4987483 (+) True XLOC_001850
TCONS_00003658 other upstream 710174 4493277 ~ 4493358 (+) True XLOC_001842
TCONS_00003646 other upstream 1794632 3408783 ~ 3408900 (+) True XLOC_001830
TCONS_00003693 other downstream 523386 5744923 ~ 5769612 (+) False XLOC_001866
TCONS_00003731 other downstream 1862234 7083771 ~ 7210108 (+) False XLOC_001887
TCONS_00003739 other downstream 2351779 7573316 ~ 7578051 (+) True XLOC_001890
TCONS_00003759 other downstream 3121651 8343188 ~ 8343305 (+) True XLOC_001906
TCONS_00003778 other downstream 3640984 8862521 ~ 8868895 (+) True XLOC_001921

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU481715 True 3995 lncRNA 0.40 5 CI01000304 2088892 ~ 2114397 (-)
rainbow trout (Oncorhynchus mykiss) TU481715 False 1228 lncRNA 0.41 3 NC_048569.1 63034813 ~ 63066308 (+)