Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU481715 |
| length | 3995 |
| lncRNA type | inter_gene |
| GC content | 0.40 |
| exon number | 5 |
| gene id | G419360 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000304 |
| NCBI id | null |
| chromosome length | 18613800 |
| location | 2088124 ~ 2114397 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU481764 | lncRNA | downstream | 21136 | 2067243 ~ 2067756 (-) | True | G419402 |
| TU481712 | lncRNA | downstream | 130726 | 1927480 ~ 1958166 (-) | True | G419358 |
| TU481749 | lncRNA | downstream | 185448 | 1902641 ~ 1903444 (-) | True | G419387 |
| TU481657 | lncRNA | downstream | 192482 | 1877252 ~ 1880008 (-) | True | G419327 |
| TU481651 | lncRNA | downstream | 328595 | 1759956 ~ 1760297 (-) | True | G419324 |
| TU481697 | lncRNA | upstream | 117358 | 2231755 ~ 2236106 (-) | True | G419353 |
| TU481705 | lncRNA | upstream | 121908 | 2236305 ~ 2239684 (-) | True | G419356 |
| TU481688 | lncRNA | upstream | 125672 | 2250825 ~ 2251046 (-) | True | G419350 |
| TU481780 | lncRNA | upstream | 304086 | 2418483 ~ 2418785 (-) | True | G419418 |
| TU481784 | lncRNA | upstream | 306746 | 2421143 ~ 2421440 (-) | True | G419422 |
| CI01000304_02066780_02080386.mRNA | mRNA | downstream | 8506 | 2066551 ~ 2080386 (-) | True | CI01000304_02066780_02080386 |
| CI01000304_02061451_02063273.mRNA | mRNA | downstream | 25431 | 2061260 ~ 2063461 (-) | True | CI01000304_02061451_02063273 |
| CI01000304_02041045_02041482.mRNA | mRNA | downstream | 47395 | 2040930 ~ 2041497 (-) | True | CI01000304_02041045_02041482 |
| CI01000304_01977963_01994161.mRNA | mRNA | downstream | 94731 | 1977858 ~ 1994161 (-) | True | CI01000304_01977963_01994161 |
| CI01000304_01975851_01976768.mRNA | mRNA | downstream | 111525 | 1975666 ~ 1977367 (-) | True | CI01000304_01975851_01976768 |
| CI01000304_02131491_02133762.mRNA | mRNA | upstream | 16903 | 2131300 ~ 2135561 (-) | False | CI01000304_02131491_02133762 |
| CI01000304_02184710_02202104.mRNA | mRNA | upstream | 70006 | 2184403 ~ 2202409 (-) | True | CI01000304_02184710_02202104 |
| CI01000304_02220391_02227729.mRNA | mRNA | upstream | 105488 | 2219885 ~ 2228318 (-) | True | CI01000304_02220391_02227729 |
| CI01000304_02244094_02244588.mRNA | mRNA | upstream | 129322 | 2243719 ~ 2244588 (-) | False | CI01000304_02244094_02244588 |
| CI01000304_02299398_02304171.mRNA | mRNA | upstream | 184746 | 2299143 ~ 2305162 (-) | True | CI01000304_02299398_02304171 |
| TU481692 | other | upstream | 114987 | 2229384 ~ 2236106 (-) | False | G419353 |
| TU481693 | other | upstream | 114987 | 2229384 ~ 2236106 (-) | False | G419353 |
| TU481701 | other | upstream | 148105 | 2262502 ~ 2265185 (-) | False | G419354 |
| TU481700 | other | upstream | 148341 | 2262738 ~ 2265340 (-) | False | G419354 |
| TU481699 | other | upstream | 148695 | 2263092 ~ 2265185 (-) | False | G419354 |
| species | RNA id | representative | length | rna type | GC content | exon number | chromosome id | location |
|---|---|---|---|---|---|---|---|---|
| zebrafish (Danio rerio) | TCONS_00003681 | True | 1610 | mRNA | 0.45 | 4 | NC_007121.7 | 5203532 ~ 5221537 (+) |
