RNA id: TU481784


Basic Information

Item Value
RNA id TU481784
length 298
lncRNA type inter_gene
GC content 0.49
exon number 1
gene id G419422
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 2421143 ~ 2421440 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATAATAACTGCTGAAATATTTGCACGGAAAACGTTTCTCAGGTCAGTCAGAGGAGCGTGCATGGTACGAACAGTGCAGCTGCAGGCGCCACTGCGGCCACCCAACCCGTTCACATGAGAATGCGTATCAATAGTACGCGTGTGTAATCTCGTAGAAAATATATGCCAAAATGAGTTTTGGCATGCATATGATACGCACTTTATGGCGTGCATATAATACACTTTGTAGTCTTGGGTAGAGTTAGTGGTGTGGGTGCCCACGTGCCAGACGGACTTGGCCCGCGGGCCGCCAGTTGAAT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU481780 lncRNA downstream 2358 2418483 ~ 2418785 (-) True G419418
TU481688 lncRNA downstream 170097 2250825 ~ 2251046 (-) True G419350
TU481705 lncRNA downstream 181459 2236305 ~ 2239684 (-) True G419356
TU481697 lncRNA downstream 185037 2231755 ~ 2236106 (-) True G419353
TU481722 lncRNA downstream 259243 2102457 ~ 2161900 (-) True G419363
TU481789 lncRNA upstream 11909 2433349 ~ 2433582 (-) True G419427
TU481790 lncRNA upstream 17082 2438522 ~ 2438725 (-) True G419428
TU481792 lncRNA upstream 19073 2440513 ~ 2440798 (-) True G419430
TU481802 lncRNA upstream 56822 2478262 ~ 2478499 (-) True G419440
TU481842 lncRNA upstream 127101 2548541 ~ 2549110 (-) True G419479
CI01000304_02314977_02384157.mRNA mRNA downstream 36986 2314977 ~ 2384157 (-) True CI01000304_02314977_02384157
CI01000304_02299398_02304171.mRNA mRNA downstream 115981 2299143 ~ 2305162 (-) True CI01000304_02299398_02304171
CI01000304_02244094_02244588.mRNA mRNA downstream 176555 2243719 ~ 2244588 (-) False CI01000304_02244094_02244588
CI01000304_02220391_02227729.mRNA mRNA downstream 192825 2219885 ~ 2228318 (-) True CI01000304_02220391_02227729
CI01000304_02184710_02202104.mRNA mRNA downstream 218734 2184403 ~ 2202409 (-) True CI01000304_02184710_02202104
CI01000304_02595522_02611332.mRNA mRNA upstream 174082 2595522 ~ 2611332 (-) True CI01000304_02595522_02611332
CI01000304_02694838_02711363.mRNA mRNA upstream 273220 2694660 ~ 2711502 (-) True CI01000304_02694838_02711363
CI01000304_02900497_02900924.mRNA mRNA upstream 478359 2899799 ~ 2902102 (-) True CI01000304_02900497_02900924
CI01000304_03158811_03160301.mRNA mRNA upstream 737053 3158493 ~ 3160301 (-) True CI01000304_03158811_03160301
CI01000304_03214897_03241215.mRNA mRNA upstream 792043 3213483 ~ 3241215 (-) True CI01000304_03214897_03241215
TU481702 other downstream 154902 2263092 ~ 2266241 (-) True G419354
TU481700 other downstream 155803 2262738 ~ 2265340 (-) False G419354
TU481701 other downstream 155958 2262502 ~ 2265185 (-) False G419354
TU481699 other downstream 155958 2263092 ~ 2265185 (-) False G419354
TU481693 other downstream 185037 2229384 ~ 2236106 (-) False G419353
TU484322 other upstream 1842305 4263745 ~ 4263808 (-) True G421708
TU484147 other upstream 2240376 4661816 ~ 4666212 (-) False CI01000304_04661808_04672936
TU484137 other upstream 2249932 4671372 ~ 4672947 (-) True CI01000304_04661808_04672936
TU484955 other upstream 4056011 6477451 ~ 6479033 (-) False G422250
TU484956 other upstream 4056011 6477451 ~ 6479033 (-) False G422250

Expression Profile