RNA id: TU481693


Basic Information

Item Value
RNA id TU481693
length 1415
RNA type TUCP
GC content 0.45
exon number 8
gene id G419353
representative False

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 2229384 ~ 2236106 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TCCAGTTAAAGTCTGCATGCAGAGGCAGTGTATAACTCAGAAAATGAAAACAGCACAACAAAATTTTTTCCCATTTTTTTAATCCCTTTATCCAAAAAACTTAAGGAAAAGAACTAAAATACAAAATAAAGGACACTTTTCCTAATCAAGACTTAAGAACACAGCACAAAACCTACAGGTTCGGTCTGAACAAAGCACAGAATAAGACAAACTTGGAAACAAAACGTCTCGCTATTTACAAGGTCAGACACTGAATTTGTCCCCAGAGGACCGAATAACATTTTTAATAGTTGTTTAAGGACAGGATTCCACAAGCTGCCTCCGAGGAGCAATGTCGAAGTCAGCCTGCCGACCATTTATATGAATGTGTTTAGCCACTTCATCAATACGGCTGGTAGCTGTTCTGATGGTTTCCGCCCTCTCGTGAGGCCTTGCCATAACTGCTCTGTTGACCATTGTAATCATCATAGCCTTGTCCATAGCCATAATTTGGATAGTTGTATCCTGAATAGTCATAGCCAGAATAGCCATTATAGCCCTGGTTGTATCCGTTGCCGTAGCCTCCATAGTTCTGGCCATAGTAGCTGTTGTATCCTTGATTATAGCCTTGGCCCTGTCCTCTTCCACGGCCTCCTCGTCCTCCTCCTCGTCCTCCTCCAAAGCCCCGGTCCGCTCTGTTCTGCTGCTGTCTGTACACTTCTTTAGGCTGGGCAACTTTGACTTCACACTTCCCTGATCCAATTTGATGGTATCTGTTCTCCAGCAGTTTCTGAACTGGATCCTCTAAAACGTATGTCACAAAGCAGAATCCCCGCCTCTCGTTTGTTTTGGTGTCCATGGGAAGCTCAATGCTTTCAATATCCCCATAAGCTCCAAAGTATTCCCGGATCTGTTCCTCAGTTGTGTCTGGACTTAGACCTCCGACAAAAACCTTCTTGGGGGGTTCCTTGCCCTTAATTGCTTTGGCTCTCTTGGGATCAATCAATTTGCCATCCAGCTTGTGCTCCTTCAGCTCTAACACCTTATCAACACTCTCAGCATCTCTGAAGAGCACGAAACCAAAGCCCCTGGAGCGGCCGGTCATGGGGTCTGTTTTGATGGTGCAGTCCAGGACTTCTCCAAACTTGGACAGGTAGTCAGTAAGGTCTTTCTTGCTGGTGTCCCAACTGAGCCCACCGATGAACATTTTCCCGTCATCCTCCTGGTTTTTACTCGCGTTTATTTTGGAGCCTTCTGGAAACTCGTCAGTGCTGAAGTCACCTTGTTCTTCGGCCTGCATTTTGGAGTACGTGTAGTTTGATCCGACACTAACTATATAATAGTATATATTACAGCGGTTTTAAAAGGTCAAAGACTCCAACACGAATAAAGTGCCGCGTTGATTAAAATGGCGGACTGAGATCAGTGACGAAATC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU481722 lncRNA downstream 67484 2102457 ~ 2161900 (-) True G419363
TU481716 lncRNA downstream 97770 2088124 ~ 2105659 (-) True G419360
TU481715 lncRNA downstream 114987 2088892 ~ 2114397 (-) True G419360
TU481732 lncRNA downstream 131766 2095578 ~ 2097618 (-) True G419370
TU481764 lncRNA downstream 161628 2067243 ~ 2067756 (-) True G419402
TU481705 lncRNA upstream 199 2236305 ~ 2239684 (-) True G419356
TU481688 lncRNA upstream 3963 2250825 ~ 2251046 (-) True G419350
TU481780 lncRNA upstream 182377 2418483 ~ 2418785 (-) True G419418
TU481784 lncRNA upstream 185037 2421143 ~ 2421440 (-) True G419422
TU481789 lncRNA upstream 197243 2433349 ~ 2433582 (-) True G419427
CI01000304_02220391_02227729.mRNA mRNA downstream 1066 2219885 ~ 2228318 (-) True CI01000304_02220391_02227729
CI01000304_02184710_02202104.mRNA mRNA downstream 26975 2184403 ~ 2202409 (-) True CI01000304_02184710_02202104
CI01000304_02131491_02133762.mRNA mRNA downstream 93823 2131300 ~ 2135561 (-) False CI01000304_02131491_02133762
CI01000304_02066780_02080386.mRNA mRNA downstream 148998 2066551 ~ 2080386 (-) True CI01000304_02066780_02080386
CI01000304_02061451_02063273.mRNA mRNA downstream 165923 2061260 ~ 2063461 (-) True CI01000304_02061451_02063273
CI01000304_02244094_02244588.mRNA mRNA upstream 7613 2243719 ~ 2244588 (-) False CI01000304_02244094_02244588
CI01000304_02299398_02304171.mRNA mRNA upstream 63037 2299143 ~ 2305162 (-) True CI01000304_02299398_02304171
CI01000304_02314977_02384157.mRNA mRNA upstream 78871 2314977 ~ 2384157 (-) True CI01000304_02314977_02384157
CI01000304_02595522_02611332.mRNA mRNA upstream 359416 2595522 ~ 2611332 (-) True CI01000304_02595522_02611332
CI01000304_02694838_02711363.mRNA mRNA upstream 458554 2694660 ~ 2711502 (-) True CI01000304_02694838_02711363
TU481701 other upstream 26396 2262502 ~ 2265185 (-) False G419354
TU481700 other upstream 26632 2262738 ~ 2265340 (-) False G419354
TU481699 other upstream 26986 2263092 ~ 2265185 (-) False G419354
TU481702 other upstream 26986 2263092 ~ 2266241 (-) True G419354
TU484322 other upstream 2027639 4263745 ~ 4263808 (-) True G421708

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00004735 False 1343 mRNA 0.47 8 NC_007121.7 5017218 ~ 5024520 (-)