RNA id: CI01000304_02131491_02133762.mRNA


Basic Information

Item Value
RNA id CI01000304_02131491_02133762.mRNA
length 2671
RNA type mRNA
GC content 0.39
exon number 4
gene id CI01000304_02131491_02133762
representative False

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 2131300 ~ 2135561 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CCCGGCAGCAGATGGACTGGATTCCACGTCCCCACTGCTGTCCATCAACGTGGCACAACAAGCCCCGCCCATTGTCTTGACGACTTCCGGCAACAACTCCCTCCCCCTCAGGCGACAAATTCCGGCGGAAAGGCAGAGCTATGTGTTGTGTAAGTGTGTGTTTTGGTTTTCGTGGCACCTGTGTGTGTTTGTACTTCTCAAATCTTAGTTAGTGATACCTGTAGCAGCTTCAAATAGCCATTAGCTATTTGTAAGAATATTTTTTGCATGTAAAAATTGTATTACTTACTGTGGACATATTGATGGACAGATTGACAGTGCATAATCATTTCATTTAAGCGCAGTGGCAGTACTATGGTACAGTGATGGTGTCAAATACCATGGTACTGAGTGATTAACATATTTATTTGCCGTGGTAATTTAAAGGTGTTATTACATACATGTAGTACATGTCTAAACAAAGTGGTAGTGATAGTTTTTGTGGTAGCGCAATACAGAAGTGATAGTATACAAAGAACTAGTGTTAAACATTTGTGCGTAATGACAGTAAATGTAGAAGTGAAACTGCTGTTAAATCAAGCTTAATGCTTTTGAATAAAAATAATAAAAAAAAGCCTTCAAAAAGACCATTTGAGATAACAGTGTTCTCTAAATTTTAAGCTTAAGATGTGAAAGATTTATAGCATTTATAAAATTAGATTTAAAGTGTATTAAACAATAATTGTACAAACCATGTCAAATTTTATGGTCATTAAGTAAATTTGTATTTAGCCCATTGAGCAGTAACTATATTCACAACATAGCAAGTGCCTTATTGTTTTTATTATGGTTTGCAGTTACAACATAATAAATTAATTCAGGACCAAATGTTTCTTTACTTGTGCTAGAGCAAAGATTCTCAACCTTTTTGATTCCAAGGCCCACCTTACTTGAAGGGTCTCTAATCTGATATCTACAAATAAATACTCAAAAATATGATGTGTGTTTAATGTTGTACAACTTTATTTTTTAGTGTGTTTAGCATTTGTATTAAGATTATATTAATAAAACTGAATTTAAATCATTTTAAGACTTACTGGAGCCTCACTGAAGTTTGTGAGGCCCCCTAGTGGGCCCGTGTCTCCTGTTTGAGAAGATAAAGTGCCTGACATAACAGAACGTTCCTATCCTATCAAGCAAAAAAATGTTAATTATGCGATTGTCTACATAATACTGTCAAGAGAACATCAAACTTTTAGCAGAAGATATCATCTAGTAAAAATCCATGTGAAATGAATGTAAGAATATATCTCAAAGCATGAATTTCTTCTCTGACAATATGTGGGCAGGGATCATATTTCTATATCAAATAATATGGCATTCTATTTCTTACTTGAATAACTTAATTTGAGCTTTCTTCTTGTAAGTATGCACTGTTTCTGTGTCAAGTAAATATGAATTGTTATACCTTCAGATGGCTACAACAAAATTATTTCTTCTTCTTTCAGAGTACAGATCCTGGAGCAGAGACTGTCAGACTGCATCACTCTATTCATTAGTGGTAGAACAGAAAGTAGAAGATAGGGGTTGAGTGGGGTAAGATGAGCCAGTGTGTAAGTTGAGACACCCTTGTATCTAGGCAACTATGTGTTGTTTTGTCATGTGACCAAACATTCTGAAGGTGCACGTCATATCCAGCTGTCTGTAAATGAGAAAAACACAAAGGAAAAGTAAGTTTGTATTACTTAAAAAGTTTTTTTTCCATGTCAAAGCATATTTATTCAACTTATGTTGTTGTCAAACATCATAGGAAAGCTATCATGCCACGAAACTATATTCGAAAAACTGACTGGGGCTCAGTAACCTACGAGGAGCTGGAGAAAGCGTTCGTTGAAGTCAAGCGTGGGAAATCTATCAGAACAGTGGCGAAGGAAAGGAAGATTGGCAGGTCCACCCTGCAGAGGTACATGAAAAAAGCTGAGGAAAAAAGAGAAAAAACAGTAGGGTACAGAGGAACAGCAGAAGCCAAGAGGATCTTGTCCGAGGAGTTGGAGGAGGAGCTTGCAGAAAACATCAGGATGCTGGCTGATCTCCACCACAGCCTTACTCCAAAGAAATGCAGAGAAGTTGCATTTGAATTTGCGCAGAAGAACAACATTCCTGTGCCCAACAACTGGGGAGAGCAGAGGTTAGCAGGTCGAGATTGGCTCAGTAGTTTCATAGCCCGCCACAATCTCTACAGCCACATAACTGAAGCAGCATCTTTGGGAAGCCATGGACAGATCATCAGTTTCAGTCTGGACAACCAAGATGAAGTCAAGAAGGAAATCAAAGAGGAGAGTAATGTTCCTGTTTCGATTCAGGATGCTTCAGGGGAGGAGAGTGCGCACAGTGGGAGTGTTCCGTCTCATTCAAAGGTTCCTTCTCCAACGCTTCTGTCATTACAACCAGAAAAGACACAAAGAAAGACGACTGATGACAGTGTAGATCTGAGTGCGTGATAGCGCTGGATGTGTGTCGCTCTGTGTTCATGCTGTTGGCGGATCGTCTCATCTGATTTCTAGCGCAGGTGGATCATTTACCGCATTGATCAGCTGAGCCTCGAAAATCAGCATCAGCATCAGTCGGTAAGACAGCTACTCATACAAATGAAATGATTCATGTCAGTAGTACATCAGTTCACATGAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU481715 lncRNA downstream 16903 2088892 ~ 2114397 (-) True G419360
TU481732 lncRNA downstream 33682 2095578 ~ 2097618 (-) True G419370
TU481764 lncRNA downstream 63544 2067243 ~ 2067756 (-) True G419402
TU481712 lncRNA downstream 173134 1927480 ~ 1958166 (-) True G419358
TU481749 lncRNA downstream 227856 1902641 ~ 1903444 (-) True G419387
TU481697 lncRNA upstream 96194 2231755 ~ 2236106 (-) True G419353
TU481705 lncRNA upstream 100744 2236305 ~ 2239684 (-) True G419356
TU481688 lncRNA upstream 104508 2250825 ~ 2251046 (-) True G419350
TU481780 lncRNA upstream 282922 2418483 ~ 2418785 (-) True G419418
TU481784 lncRNA upstream 285582 2421143 ~ 2421440 (-) True G419422
CI01000304_02066780_02080386.mRNA mRNA downstream 50914 2066551 ~ 2080386 (-) True CI01000304_02066780_02080386
CI01000304_02061451_02063273.mRNA mRNA downstream 67839 2061260 ~ 2063461 (-) True CI01000304_02061451_02063273
CI01000304_02041045_02041482.mRNA mRNA downstream 89803 2040930 ~ 2041497 (-) True CI01000304_02041045_02041482
CI01000304_01977963_01994161.mRNA mRNA downstream 137139 1977858 ~ 1994161 (-) True CI01000304_01977963_01994161
CI01000304_01975851_01976768.mRNA mRNA downstream 153933 1975666 ~ 1977367 (-) True CI01000304_01975851_01976768
CI01000304_02184710_02202104.mRNA mRNA upstream 48842 2184403 ~ 2202409 (-) True CI01000304_02184710_02202104
CI01000304_02220391_02227729.mRNA mRNA upstream 84324 2219885 ~ 2228318 (-) True CI01000304_02220391_02227729
CI01000304_02244094_02244588.mRNA mRNA upstream 108158 2243719 ~ 2244588 (-) False CI01000304_02244094_02244588
CI01000304_02299398_02304171.mRNA mRNA upstream 163582 2299143 ~ 2305162 (-) True CI01000304_02299398_02304171
CI01000304_02314977_02384157.mRNA mRNA upstream 179416 2314977 ~ 2384157 (-) True CI01000304_02314977_02384157
TU481692 other upstream 93823 2229384 ~ 2236106 (-) False G419353
TU481693 other upstream 93823 2229384 ~ 2236106 (-) False G419353
TU481701 other upstream 126941 2262502 ~ 2265185 (-) False G419354
TU481700 other upstream 127177 2262738 ~ 2265340 (-) False G419354
TU481699 other upstream 127531 2263092 ~ 2265185 (-) False G419354

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00003675 True 1460 nonsense_mediated_decay 0.44 6 NC_007121.7 5135842 ~ 5147582 (+)
tiger barb (Puntius tetrazona) TU110245 False 1035 TUCP 0.47 5 NC_056708.1 3663944 ~ 3667908 (+)