RNA id: TCONS_00005816


Basic Information

Item Value
RNA id TCONS_00005816
length 1437
lncRNA type antisense_over
GC content 0.37
exon number 3
gene id XLOC_001863
representative False

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 5527190 ~ 5543141 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TGTATTTCTTTAGTCTCAAACACCAACATGCAATAAGTGGACGTTATATACACAGCAATTTACAACAGATTTGCCCACTTTGAGACACCAAACCCCTTTTTTCAAACCAACAAGAGCAGGGGAGCTGCTTCTCTGTGTGTCTGCTGAGGATCTGATGTGTTCAATGCTGAGAATAAACACATGTAAAGCAGCAGAATGGACAATGTTGCCAGTTTGTCTGAAGATGGTCTGCTATCATCCCTGAGCCCATGAGTTCAGCGTCACATGCAAATAATTCTAAAGAAACTTGTGAAGCGGCCCCAGTTCAGCGAGCTCCATAACCAGCATAAGGTTTTCCGCTTCACAGATCCCAATCATGCGGACTATGTATGGATTATCCAGCTGCTGCATGACGTTCGCCTCCCGCAACATCTCGTCCTTTACTGCTGCATTATCGTCATCATTCTTTAGGATCTTAACAGCAACAACCTTCTGTGTTCTGAAGTAAACAAACCACATACACTCTTAAAATGTGTCTGAAAGAAACACTCAGttaatttttgaaaataaaaacatttagaacCCATTAAGCCAATTTTTTTAGTCAGGCAGTGGCACTTtgaacttagcttagcatagattagaccattagcatctcactcaaaaaatccaaaaaagaaaattaaagcttgactcttctctGGTTACATTGTGTAGACCAACCGAAAATGAAACGTTGCTATTTTATAGGCTGATATGTCCAGGAACTATAATCTtgttctggcgtaataatcaagtaactttactgctgtaccatggctgcagcggGCACAATGTAATTACCTACTGCTTTTGCTATagattttgctgtttgtttaaacaatttttaaaaaatgagctgaaacaacacaattattgagagtttttttgacacattttatgttcaatccacttaaatttataaaaactcagttaaattgattgtgtggaacccagcattttcaaCAGTGTGTAGTTACCCAGCAAGGGGCTTTcatttttggtcagttttacagtacacgatgtaactacagaggagtcaagctttaaataggaaagtgtttaaaactctttttaaagATTCTGAGATGCTAATTGTCAAAGAAAAAGtccatgatctatgctaagctaagctaaaattgctcccGCCAGAGTTCAGCTGAAGGgtttcaaaaatatttgttttgtaaatgattTATTACATGTTTAAAACATATTGAAACAGACTGCAATTTATGCAAATATGTCGTTGCACTATGCCTGATCATGGTAGATCATCCGCATTTTATGAGCATCGGCTTATTTGCCACAATGCTAATTTGTTCTGTGCTTTTTGCATTTGTCAATATATAAATAAGATGCTACTGTTTGTTCTTTAATCTGTGCATTTTCTGTAAATCATCAGCAGATATTTTTACA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005675 lncRNA upstream 292940 5232327 ~ 5234250 (+) True XLOC_001857
TCONS_00003678 lncRNA upstream 374789 5149469 ~ 5152401 (+) False XLOC_001855
TCONS_00003677 lncRNA upstream 375144 5149380 ~ 5152046 (+) False XLOC_001855
TCONS_00005674 lncRNA upstream 535152 4987766 ~ 4992038 (+) False XLOC_001851
TCONS_00003667 lncRNA upstream 562080 4964510 ~ 4965110 (+) True XLOC_001849
TCONS_00005676 lncRNA downstream 44819 5587960 ~ 5588230 (+) True XLOC_001864
TCONS_00005818 lncRNA downstream 245266 5788407 ~ 5793526 (+) True XLOC_001867
TCONS_00005677 lncRNA downstream 337559 5880700 ~ 5881233 (+) True XLOC_001868
TCONS_00005819 lncRNA downstream 573153 6116294 ~ 6116936 (+) True XLOC_001871
TCONS_00003709 lncRNA downstream 797327 6340468 ~ 6350276 (+) False XLOC_001873
TCONS_00003687 mRNA upstream 51500 5422575 ~ 5475690 (+) True XLOC_001862
TCONS_00003686 mRNA upstream 107934 5414224 ~ 5419256 (+) True XLOC_001861
TCONS_00003685 mRNA upstream 116205 5409508 ~ 5410985 (+) True XLOC_001860
TCONS_00003684 mRNA upstream 119681 5268054 ~ 5407509 (+) True XLOC_001859
TCONS_00003683 mRNA upstream 262039 5234344 ~ 5265151 (+) True XLOC_001858
TCONS_00003689 mRNA downstream 101215 5644356 ~ 5655109 (+) False XLOC_001865
TCONS_00003690 mRNA downstream 102746 5645887 ~ 5655109 (+) True XLOC_001865
TCONS_00003691 mRNA downstream 146369 5689510 ~ 5767172 (+) False XLOC_001866
TCONS_00003692 mRNA downstream 146384 5689525 ~ 5787286 (+) False XLOC_001866
TCONS_00003695 mRNA downstream 201800 5744941 ~ 5786667 (+) False XLOC_001866
TCONS_00003679 other upstream 374789 5151349 ~ 5152401 (+) True XLOC_001855
TCONS_00003675 other upstream 379608 5135842 ~ 5147582 (+) True XLOC_001854
TCONS_00003668 other upstream 539707 4986050 ~ 4987483 (+) True XLOC_001850
TCONS_00003658 other upstream 1033832 4493277 ~ 4493358 (+) True XLOC_001842
TCONS_00003646 other upstream 2118290 3408783 ~ 3408900 (+) True XLOC_001830
TCONS_00003693 other downstream 201782 5744923 ~ 5769612 (+) False XLOC_001866
TCONS_00003731 other downstream 1540630 7083771 ~ 7210108 (+) False XLOC_001887
TCONS_00003739 other downstream 2030175 7573316 ~ 7578051 (+) True XLOC_001890
TCONS_00003759 other downstream 2800047 8343188 ~ 8343305 (+) True XLOC_001906
TCONS_00003778 other downstream 3319380 8862521 ~ 8868895 (+) True XLOC_001921

Expression Profile

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