RNA id: TCONS_00005818


Basic Information

Item Value
RNA id TCONS_00005818
length 814
lncRNA type antisense_over
GC content 0.38
exon number 4
gene id XLOC_001867
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 5788407 ~ 5793526 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

agtaaatctagctaggctacttatagtgagtttggattaatctgattggctaactaatgattgtagatgggtggccagctgcagtcaatcatatcacgtgctcctcggaaattgtgaaacttcacttaccCTCTGATAAATTAAAACCAAAGTACTGCATTACCCACAATTCCAAAGTTGAACTCAACAAATGTTACTACAGAAATACAATGATTAGAGGACGTTTGGATAAAGTCTTTATTAGACCTTAGTATCAGCGATATACACATAAGTGATGCTATGACAGAAATGATATCACACAGAGATACATGTAGAAAAGGCATACGGTGAAACATTTGCATTTcataaatgccattttaaatgtaGTGTTAGTTTATATTGGAGATCACGAGAACCACGGATACAAGGTTAACTCAAGCTAGAGCTCACATCCTGTTGCGTATGGGTAAAACGAGGAATATTTGAAATATGATCAGTAATACTTGTCAATAACGTAAAAATAACGTGCAACTTGgcactttttttcattgttttcttaAGAAAACTAACAAAGCAAGAGAAATGACATCTCAACTTGAGACTGTGAAGTTTTAAAGCTCTGAACATTAACCACTGACCAATTAGAACACTGACTaacagctgaccaatcagaagattAAACCGCTGGCCAATCAGaacgctgaccaatcagaacattcaaCCACTGATCAATCAGAACattcaggatctgaccaatcagaacatccaggcactgaccaatcagagcattcAGGATCTGACCATTCAGaacatccaggcactgaccaatcagaac

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005676 lncRNA upstream 200177 5587960 ~ 5588230 (+) True XLOC_001864
TCONS_00005817 lncRNA upstream 245266 5527190 ~ 5543141 (+) False XLOC_001863
TCONS_00005816 lncRNA upstream 245266 5527190 ~ 5543141 (+) False XLOC_001863
TCONS_00003688 lncRNA upstream 245317 5529734 ~ 5543090 (+) True XLOC_001863
TCONS_00005675 lncRNA upstream 554157 5232327 ~ 5234250 (+) True XLOC_001857
TCONS_00005677 lncRNA downstream 87174 5880700 ~ 5881233 (+) True XLOC_001868
TCONS_00005819 lncRNA downstream 322768 6116294 ~ 6116936 (+) True XLOC_001871
TCONS_00003709 lncRNA downstream 546942 6340468 ~ 6350276 (+) False XLOC_001873
TCONS_00005820 lncRNA downstream 835093 6628619 ~ 6628997 (+) True XLOC_001877
TCONS_00005821 lncRNA downstream 850871 6644397 ~ 6644775 (+) True XLOC_001878
TCONS_00003692 mRNA upstream 1121 5689525 ~ 5787286 (+) False XLOC_001866
TCONS_00003695 mRNA upstream 1740 5744941 ~ 5786667 (+) False XLOC_001866
TCONS_00003694 mRNA upstream 1740 5744941 ~ 5786667 (+) True XLOC_001866
TCONS_00003691 mRNA upstream 21235 5689510 ~ 5767172 (+) False XLOC_001866
TCONS_00003689 mRNA upstream 133298 5644356 ~ 5655109 (+) False XLOC_001865
TCONS_00003696 mRNA downstream 161261 5954787 ~ 6004863 (+) False XLOC_001869
TCONS_00003698 mRNA downstream 161274 5954800 ~ 6004759 (+) False XLOC_001869
TCONS_00003697 mRNA downstream 161274 5954800 ~ 6004759 (+) True XLOC_001869
TCONS_00003699 mRNA downstream 217044 6010570 ~ 6032875 (+) False XLOC_001870
TCONS_00003700 mRNA downstream 217048 6010574 ~ 6023725 (+) False XLOC_001870
TCONS_00003693 other upstream 18795 5744923 ~ 5769612 (+) False XLOC_001866
TCONS_00003679 other upstream 636006 5151349 ~ 5152401 (+) True XLOC_001855
TCONS_00003675 other upstream 640825 5135842 ~ 5147582 (+) True XLOC_001854
TCONS_00003668 other upstream 800924 4986050 ~ 4987483 (+) True XLOC_001850
TCONS_00003658 other upstream 1295049 4493277 ~ 4493358 (+) True XLOC_001842
TCONS_00003731 other downstream 1290245 7083771 ~ 7210108 (+) False XLOC_001887
TCONS_00003739 other downstream 1779790 7573316 ~ 7578051 (+) True XLOC_001890
TCONS_00003759 other downstream 2549662 8343188 ~ 8343305 (+) True XLOC_001906
TCONS_00003778 other downstream 3068995 8862521 ~ 8868895 (+) True XLOC_001921
TCONS_00003779 other downstream 3075942 8869468 ~ 8880126 (+) False XLOC_001922

Expression Profile

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