RNA id: TCONS_00003724


Basic Information

Item Value
RNA id TCONS_00003724
length 2856
RNA type mRNA
GC content 0.46
exon number 27
gene id XLOC_001885
representative False

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 6884123 ~ 6905574 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGGCTCTTCACGCGTGTCCACCTGCTACCGGCTCTTCTGAAAAAAAGTCTCACCTAAAATTACCCAATATGGATGACTGGGAGGAAGATCAGAGTCCCGTTGTGTCTTGCAGCTCAGGATTTGGTCTAGGCTCAAATGGTTCTGATGGAGGATTCAAGAGCTTTTATACAGgaGGTGCTGGAAATGACAAGTCAAACAGTGAAGGTACTGAAGGTAGCTCATGGAAAATGACTGGTGATTCGTTCAGGGGGAGAGGAGGCAGGGGAGGATCACGAGGAGGCAGAGGAGGCTTTAGCGGTTTTAAATCAGAAATTGATGAGAATGGCAGCGATGGAGGTTGGAACGGAGGTGAAAGTCGAGGAAAAGGACGTGGTGGTTTCCGTGGTGGTTTTCGCAGTGGCTCCCGTGATGaaaatGATGAAAATGGAAATGATGATGGTTGGAAAGGAGGTGAAAGCCGAGGTAGAGGTCGAGGTGGTTTCGGGGGTGGTTTTCGTGGAGGTTTCCGTGATGGTGGTAATGAAGACACTGGGAGAAGAGGCTTTGGAAGAGAAAATAATGAAAATGGAAACGATGAggGAGAAGGCAGAGGAAGAGGTCGTGGTGGTTTCCGGGGTGGTTTTCGTGATGGTGGTGGTGATGAGAGTGGAAAAAGAGGCTTCGGAAGAGGAGGTTTTAGAGGCCGGAATGAGGAAGTATTTTCCAAGGTCACAACTGCAGACAAGTTGGATCAAGAAGGAAGTGAAAATGCAGgaccCAAGGTTGTTTATGTGCCGCCGCCTCCTCCAGAGGAGGAGAGCTCGATATTCTCCCATTATGCAACAGGCATTAATTTTGACAAATATGATGATATTCTTGTGGACGTGAGTGGCAGCAATCCTCCAAAAGCAATTATGacTTTTGAGGAAGCAGGACTTTGTGACTCACTGAGCAAAAATGTATCAAAGTCTGGATATGTGAAGCCTACACCTGTTCAGAAACATGGCATTCCCATCATTTCAGCTGGACGGGATCTAATGGCTTGTGCTCAGACTGGATCAGGAAAAACGGCGGCCTTCCTGCTGCCTATCCTACAGCGCTTTATGACTGATGGTGTGGCAGCCAGCAAGTTCAGTGAGATACAGGAGCCTGAGGCCATAATCGTGGCTCCCACCAGAGAACTTATCAATCAGATCTATCTGGAGGCCAGGAAGTTTGCATACGGGACCTGTGTACGACCTGTTGTGGTTTATGGAGGTATAAATACTGGATATACTATCCGAGAGGTGTTAAAGGGCTGCAATGTTCTGTGTGCTACTCCTGGAAGATTGCATGACCTCATTGGTCGTGGAAAGATTGGCCTGAGTAAAGTGCGCTATCTAGTTCTGGATGAAGCAGACAGAATGCTGGACATGGGCTTTGAGCCAGAAATGCGCAAACTGGTGGCGTCTCCTGGTATGCCTTCAAAAGAGGAACGACAAACCCTCATGTTCAGTGCCACCTACCCTGAAGATATTCAAAGAATGGCTGCTGACTTTCTTAAAGTGGACTATATTTTCCTTGCTGTTGGTGTGGTGGGTGGAGCATGCAGTGATGTGGAGCAAACCATTGTTCAGGTGGACCAGTACTCAAAGAGGGACCAGCTGCTTGAATTGCTCAGAGCAACAGGTAATGAGCGCACAATGGTTTTTGTGGAAACCAAAAGAAGTGCTGATTTCATAGCAACATTTCTCTGTCAAGAGAAGATCTCAACCACAAGCATCCAtggTGATCGGGAACAGCGAGAGCGAGAGAAAGCTCTCAGTGATTTTCGCCTTGGCCAGTGTCCAGTTCTGGTCGCCACATCTGTAGCTGCTAGAGGCCTGGATATTGAGCAAGTCCAGCATGTTGTGAATTTTGACATGCCCAGCAGCATCGATGAGTATGTCCATCGCATAGGAAGAACTGGACGCTGTGGGAACACCGGTCGCGCCGTGTCCTTTTTTAACCCAGAGTCTGACACTCCATTAGCTCGCTCCCTGGTCAAAGTCCTTTCAGGGGCCCAACAAGTAGTTCCAAAATGGCTGGAGGAAGTTGCCTTCAGTGCTCATGGGACAACAGGCTTCAACCCACGTGGGAAGGTGTTTGCATCTACAGACTCGCGGAAGGGAGGATCCTTCAAGAGCGATGAGCCGCCACCATCACAAACATCTGCCCCGAGCGCAGCAGCTGCTGCAGACGATGAGGAATGGGAATAACTGGCCTCACAcctgttatatttattttatttttattttatttgtgcgaGCTTCTTCAATACCATTTCAGGATATTTGTTAATGTTGAATGACTAAAGTAGCATTAGGATAAAGCTGTTGTATTTAGAGTCACATTGAATGCTGTAGGTTTGACCTCAAGGACGATAATCAAGACTAATACCTTTTGGCAGTTTAATTTGATCATCTTTTTGGTATCACTCGTTTTGACTGGAGCACATCTGAAATAGTGGATTTGTTTTACTAGAGCACAAGTGCAGAAGTGGGTGGGTTTGTTTAATCACATTTTAACACTTTGCTAGGAGTGTATTGAGTTTTGTAAGCTTTGACCTAAAGGTGTTTCCTACAGTTAAATCTATTAATCAGTTCTATTGTTGATTGTGACTGTTTGTAGGTTATTTTTCTTGACATTTCCGTCTTGAAGCCAGAGTATAGAACAAGAAACTTGTTTTGCAGATGTACCTTGCCAGATAAAGGTAGCtaaagtcattgtttaacagacATCTCtttaattttaaagtcaaaatgttgATAAAATTCAGTCAAGAGGCAGTGACTGACTGTAACAGAGCGGTGCTTCCTCACTAGCTGAAGTGGCTCAAAATAAAGACGGATACTGGTG

Function

GO:

id name namespace
GO:0008406 gonad development biological_process
GO:0051445 regulation of meiotic cell cycle biological_process
GO:0030154 cell differentiation biological_process
GO:0007276 gamete generation biological_process
GO:0007281 germ cell development biological_process
GO:0005634 nucleus cellular_component
GO:0043186 P granule cellular_component
GO:0005524 ATP binding molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0003724 RNA helicase activity molecular_function
GO:0004386 helicase activity molecular_function

KEGG:

id description
ko03036 Chromosome and associated proteins

ZFIN:

id description
ZDB-GENE-990415-272 Predicted to enable RNA binding activity and RNA helicase activity. Acts upstream of or within germ cell development; gonad development; and regulation of meiotic cell cycle. Located in P granule. Is expressed in several structures, including blastodisc; germ line cell; reproductive system; shield; and unfertilized egg. Orthologous to human DDX4 (DEAD-box helicase 4).

Ensembl:

ensembl_id ENSDART00000149334

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005823 lncRNA upstream 128386 6754270 ~ 6755766 (+) True XLOC_001884
TCONS_00005822 lncRNA upstream 199356 6684418 ~ 6684796 (+) True XLOC_001880
TCONS_00005821 lncRNA upstream 239377 6644397 ~ 6644775 (+) True XLOC_001878
TCONS_00005820 lncRNA upstream 255155 6628619 ~ 6628997 (+) True XLOC_001877
TCONS_00003709 lncRNA upstream 533876 6340468 ~ 6350276 (+) False XLOC_001873
TCONS_00003730 lncRNA downstream 178165 7083739 ~ 7102754 (+) False XLOC_001887
TCONS_00005678 lncRNA downstream 903137 7808711 ~ 7809243 (+) True XLOC_001897
TCONS_00005824 lncRNA downstream 937832 7843406 ~ 7849873 (+) True XLOC_001898
TCONS_00005825 lncRNA downstream 965035 7870609 ~ 7901888 (+) True XLOC_001899
TCONS_00005826 lncRNA downstream 1072943 7978517 ~ 7984582 (+) True XLOC_001900
TCONS_00003721 mRNA upstream 131037 6747720 ~ 6753115 (+) True XLOC_001883
TCONS_00003720 mRNA upstream 149355 6729670 ~ 6734797 (+) True XLOC_001882
TCONS_00003719 mRNA upstream 181340 6697369 ~ 6702812 (+) True XLOC_001881
TCONS_00003718 mRNA upstream 197177 6681523 ~ 6686975 (+) False XLOC_001880
TCONS_00003717 mRNA upstream 213869 6664911 ~ 6670283 (+) True XLOC_001879
TCONS_00003728 mRNA downstream 2141 6907715 ~ 6944407 (+) True XLOC_001886
TCONS_00003729 mRNA downstream 124090 7029664 ~ 7233955 (+) False XLOC_001887
TCONS_00003732 mRNA downstream 196887 7102461 ~ 7122680 (+) False XLOC_001887
TCONS_00003733 mRNA downstream 276594 7182168 ~ 7221801 (+) False XLOC_001887
TCONS_00003734 mRNA downstream 276849 7182423 ~ 7231381 (+) True XLOC_001887
TCONS_00003693 other upstream 1114540 5744923 ~ 5769612 (+) False XLOC_001866
TCONS_00003679 other upstream 1731751 5151349 ~ 5152401 (+) True XLOC_001855
TCONS_00003675 other upstream 1736570 5135842 ~ 5147582 (+) True XLOC_001854
TCONS_00003668 other upstream 1896669 4986050 ~ 4987483 (+) True XLOC_001850
TCONS_00003658 other upstream 2390794 4493277 ~ 4493358 (+) True XLOC_001842
TCONS_00003731 other downstream 178197 7083771 ~ 7210108 (+) False XLOC_001887
TCONS_00003739 other downstream 667742 7573316 ~ 7578051 (+) True XLOC_001890
TCONS_00003759 other downstream 1437614 8343188 ~ 8343305 (+) True XLOC_001906
TCONS_00003778 other downstream 1956947 8862521 ~ 8868895 (+) True XLOC_001921
TCONS_00003779 other downstream 1963894 8869468 ~ 8880126 (+) False XLOC_001922

Expression Profile

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