RNA id: TCONS_00003729


Basic Information

Item Value
RNA id TCONS_00003729
length 5460
RNA type mRNA
GC content 0.45
exon number 15
gene id XLOC_001887
representative False

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 7029664 ~ 7233955 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GAAGCATTTGATCGAGTCAGCAGCTCCTCTACACACGCAGAAATTGTCGCCAAAGCCAAGTACGAGTTTCTCTTCGGAAAGGCAGAAGACTCAAGCTCATCAGATAGCgTTACTTCTCCACCCCAAGCGAAAGAAAAAGGCAGCTCAATTCTTGACTCTACTCTCGATGATGATGACATTGATGAGACGTCACTCTTCCAGGAGATTGACCGAGAGCTGTCGAACCTGTTAAGCGGCCTGACAGCCCGGAGTCAGCATGCAGCGACCGAACAGGGCTCCCTGTCAGGAGACGCCACCGCCTCACCCATGATCCCCTGCAACGGACAAAACCAAACCTTGCCATCACAACTGGAAATGGCCAACCAGGGTCTAGACCTTCAGAACGGCCAGTCTGAGTTAACAGGAGACTCCCTCCTGACGTCTGGGCTGCTGTTTGACTCATGGTGCGAGGCACTCATAAAGGACCCCAGCTCAGTGATGGCGGCCGCAAATGAGCTGAGCTGCTTCAGCACTGGGAATGCACCAGATAAACTTGATGCCAGCCCAACTCCTGCTGGAGCACATGTGGAGCCATCCGGAGAGGTGCTCTCGCAAGAAAACTCCGGAAAGGAAACAGAGGGCAAGAGGACAGGGTCGCCCTCTCCCATCAGAACAGACGAACCTTCGGCAGAAATCGTGGACGAGTCTCTTGAGGAATCCAATAAAATCCTGGCGGAGGTCCCAGGAATCTTTAGCGGCTTTCTGGAAGGGGGCAAACTGCGGGACAAGCCGCCGAAGAAGCTGCGGTTTGTGGAGAGCAGAGCTGAAAGCCTAGTGAATGGAGAGATGCAAAACGGAAGTCATCAGAGCTGCAGTGTGAAAGAGGAAGTGACTCAGGACATACAGAGTACAGCAGCCGCAGGAGTGCCACAGGGGAGCGTGCTGAGACCCGAGCAAAAACCAACAGAAAACGGCACTGACAGGTGTTCTGCAGGTAAATCTGCTGCAGGTGAGATTGACACCACAGATGTCTTCAGCTGTCAGTTTGAGAACATCCTGGAGTCGGAGCGTCTGCGAGGGACTCTCTACAGCAGCATGGACTCACTGGACGCCCTGTCAAACCCTGTGCCTGAACCCACTCCGCAAAGCACTCTAGAACCCTCGTTTGCCTTCGACATTCCTCTCACTCCTATGATTCAGCAGCGACTCAAAGACAGGAGTCTGTTCCTGGAACCAGCAGCACCTGACCTGAGCTCGGACACTGAGGTGTTGAGCGTCACGAGCACAAAGGAGCGCGGAAAAACAGCTCTGGAGGTCACCTCATCCTTTCTCTCAGCAGGATGTAAGGACTCCTGTGCAGCTCTAGCTAACGGATTAAACGAGAGAGACCCAAAAGACTGGCTGCAGGGCTGTTTGAGCAGCGATGCGGGGCTGAAGGACGTGCTGTCGGACTGGGACTCAGACATGGATGTTGTGGAATGTCTTAAGGACACAGATGTTCTCCACAATGGCAGCCGGAGTGATCAGGAAGCTGCCCGACGTCTGGCCAGACGGCTCTACCACCTGGAGGGCTTCCGACGCTCGGATGTCGCCAAACATCTGGGCAAGAATAATGACTTCAGTAAGATGGTTGCAGAAGAGTACCTCACGTTCTTTGAGTTTACAGACCAGACATTGGACCAATCGCTCAGATGTTTTCTGAAAGCATTCTCGCTAATGGGCGAGACTCAGGAGAGGGAGCGGGTGTTAATTCATTTCTCTAATCGGTACTATCAGTGTAATCCCACCATCATCACCGCACAAGATGGAGTTCATTGCCTTACCTGTGCACTAATGCTGCTCAACACAGACCTTCATGGCCCTAATATTGGGAAGAAGATGACGTGCCAGGAATTCATCAATAACCTGGACGGTCTCAACGGTGGACAAGATTTCCCACGGGAGCTGCTGAAGTCATTGTATAACTCCATCAAGAACGAGAAGCTGGAATGGGCTGTaGATGGAGATGAGCTGAAGAAGTCTCTGTCTGAACTGGCGGATAAGAACCATCACTCTCACAGTAAGAGCATCAGTCGCATCAGCAGCGGCAGTAACCCCTTCCTAGACATCGCACACGACCCCAATGCTGCCGTCTACAAAACTGGCTTTTTGGCCCGCAAAATCCATGCCGACATGGACGGGAAGAAAACTCCAAGAGGAAAGCGAGGCTGGAAAACCTTTTATGCTGTTCTCAAAGGCATGATCCTCTACTTGCAGAAGgATGAGTATAAGCCGGAGAAGGCCCTATCAGAGGACGATCTGAAGAATGCCATCAGTGTGCATCACGCTCTCGCCATCAAGGCTATGGACTACGAGAAGAAGCCCAATGTCCTCAAGCTCAAGACTGCTGACTGGAGAGTTTTCCTCTTCCAGGCCCAGAGCCCTGAGGAAATGGAGTCTTGGATTAGAATAATCAACTCGGTGGCGGCCATGTTTTCTGCCCCATCTTTCCCTGCTGCCATTGGCTCTCAGAAGAAATTCAGCCGCCCGCTGCTGCCGGCGACCACCACTCGAATGTCTcagGAAGAGCAGCTGAAGTCCCATGAGGCCAAGCTGAAGCACGTCTCTACAGAGTTAGCTGAGCACAGATCCTACCCTCCAGACAAGAAGGTCAAAGCCAAAGAGATCGATGAGTACCGTTTGAAAGAGCACTACCTGGAATTTGAGGAGAACCGTTACGAGATGTACGTGAAGCTTCTGAAAGAGGGGGTGAAAGAGCTGCTGACGGCGAAGGATGGCGACGCAGCGCTGAAGAAGTCGCAGTCCAGCCCTTCTCTCAACCAGGATTCCCAGCCGGCCGCCGCCAAAGTCAAGCGCAACACGTCCGAGCGGAAGGATTACCGGCCTGAAACTCCTAAGGTTACATAGGCAGTGTTCTGCTTTTCTTTCTGAGAGCCATTGTATATCACGCGTGACTGTATTTTGATGTAATTTATTTATCTGCCGACAGTTGTATCAGAAAACATTTGTGTAAAATGTCAATTGATCAATTGATTGGAAGTTGTACATCTCTAGGTCTCCCTTGACCAGCCGGTTCTTGTGGAGCAAATAGTgtggttttcttttttatttgttagcGTGTCCAGATTTAGTagttgcactttattttacagtgtgtgcaCTTACAGTACACAGGAAATGACTTAATAGGGTTAaggtttggtttaggggtaggaCATGgtgactgtaaaataaagtgctagCGATTTTTGTTTAGAGAACATGACTGTCTCTTGATTGTGCTGTTCCCCTAATTTGcttttccttcaagagaagtatTTTCTTCAAGTTAGTGGAAAGGTCCACATGTAGATATCCCGCAGTAGTCTCACTCAGAGcgttaacttttattttaatatataaacgaGCAACAGATATAAGCTGAAACGCTAGAAAGGGTAATTTTGAGGATCCTTCAGGTTGTTAATGCATGGATTCGATGCGGAATTTGTCACGAAAGCCTTTGGTTGTCGTTGCTGATGTAGTTCACTATTAACCACCTACTAACAAACCACCGAATTGTCGATATTGCATCTACTCACGCGCATTAATGGATCGTACCAGCATGTCACAGCAATGGACCGAAACTCAAAGCAGATTATTTTCTAATGATGATTTCGAGGTACTTGCTGAGTTACGGCGTTTCAGACTGCGAGATGACATTAACGTCATCCACTGTGCAGTTTGTGCCAtctatttttttatctgtttgttgAAGTAAAGAGTATACTTCTGCTTTTTCAGTAGTGTAAATGCCAATTCTccttttgtgtattttataatcttatatatacacatatatatatttgaatttttaaTTCTCAGTTCAGAACATTATTGTTGTAAAGATGACGGTAGTATTTATAGTGCACTTTATTAGTTCCTTTGACTCTTTTAGAGAGTTTTTTAAAGGGTAGTGATATGTCACTTCATTATATCACAGGTTTTTCCAAGCATAACCAAAAGGATGGTTGGTTTTATTGAAGGTACACAGCCGAAGGTACAATTTTCACTCGTGTAAAGTCGTGTTAGTTTGTCCGTGCTCGCGTGTGTTTTTGCTGTCATGTTTAGGTTGTTCGAAGACACGGTTTGTAGAAGAATTTAGAACAGGTTGCTTTTCGTGATGCTGACTTTGAATTTCAGATGACATTTTCATTACCGATGACATGTCGTGAACACTATATGAACGTTCTACGCTGTTTATTGCACACCAACAAAGATTGTCCACGGTGGATCTATTTACTCGTTTGAGCTTTTAAAAAGGAATATGAATATGAAAAGCTGTTCACATTTACAGATATTAGTCCCCGAAGTCTATAATGACATTTGTTTACTTGAAATGTTTTTTGAGGacactttattattatgtttttgctAGAATTAAACAGATAGAAAGAATTCGTTCATATCTACGTTGTGTTATTGCAAGCTCTTTCAATGGACTTTATAGATTGTTGCtgcgtcatgtttttttttcttgctgtgAAATCGCAGGACATGTCATTTCTCCTGTCCAGTTCTGAATACAGAATTAGCACTTAgatgatgtttatttttatttatttgttgcaaAGTGtagaacaaaaaattatttttgagcaGTATTTACTCGCATAGTAATCAGTACTATAAAACTGTCATCAGTGTGAAAGGCCATGCGAAGAGATATGGACTCTTCTTTTATGTGCTGCAGTGTTCCATGTTATTTGTTCACGCTTCTCCAGACCAAATAGATTCCTGTGACACGTAACTCTGGCACTAACCCTTTAACAGTGCACGTCGTAGTACTTTTAAATAGTATCTCCATTCGTTATTATTTTGCATAGGACGGAAATCATAAGAAGCGATGGTGGCATGCAAGTGGActtcaaaatgaaaacaataacaacatgaaaagCAGTCAGACTTGCATAATTAAAAGCATTTAAGAGTCAGATATCTGTCTTAAGATGATATTTTCGACTGAAAAATTTGCTTTGTGTGTGACTTTTAATCTCCCGGGTGTGAACTACTCTTGTTTACCATGCCACAGTGTTGTTTATTTCTCCCTGAGCTGAACTTGATTGTATACATCTTGACTTTTTGTCCACGCAGATGTCATCTTTGTCTGTTTACTTTCTCAAACCCTGTAATGTATGACCTCCTCTCAAGATGCAATTGTGTGAGTATTGAAGGAGAGCAGCTGGTTTTAATGCGCCTTAGCCATCAGTTGGGCCGTTTGGTGTCCAAACTCAGATCTAGTgaactttctctctcttttttttttttagctgtgatGCTGTACTTCTCCTGTAAATGTTGTTAAATATGCCTGTCGCCCTGTGTTCTGAAGACTGAATTAGTTTGGTTGTGATCGGTTGGCATGAGCGTGTCTTACGCCTGTCCACAAAGATCAGGGACACAATGTTGGCTTCAGTGAATAAAACACTGTATTTAATCGTT

Function

GO:

id name namespace
GO:0032012 regulation of ARF protein signal transduction biological_process
GO:0005543 phospholipid binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-8195 Predicted to enable phospholipid binding activity. Predicted to act upstream of or within regulation of ARF protein signal transduction. Predicted to be located in ruffle membrane. Is expressed in hypothalamus and telencephalon. Orthologous to human PSD3 (pleckstrin and Sec7 domain containing 3).

Ensembl:

ensembl_id ENSDART00000166206

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005823 lncRNA upstream 273898 6754270 ~ 6755766 (+) True XLOC_001884
TCONS_00005822 lncRNA upstream 344868 6684418 ~ 6684796 (+) True XLOC_001880
TCONS_00005821 lncRNA upstream 384889 6644397 ~ 6644775 (+) True XLOC_001878
TCONS_00005820 lncRNA upstream 400667 6628619 ~ 6628997 (+) True XLOC_001877
TCONS_00003709 lncRNA upstream 679388 6340468 ~ 6350276 (+) False XLOC_001873
TCONS_00005678 lncRNA downstream 574756 7808711 ~ 7809243 (+) True XLOC_001897
TCONS_00005824 lncRNA downstream 609451 7843406 ~ 7849873 (+) True XLOC_001898
TCONS_00005825 lncRNA downstream 636654 7870609 ~ 7901888 (+) True XLOC_001899
TCONS_00005826 lncRNA downstream 744562 7978517 ~ 7984582 (+) True XLOC_001900
TCONS_00005679 lncRNA downstream 754070 7988025 ~ 7992459 (+) True XLOC_001901
TCONS_00003728 mRNA upstream 85257 6907715 ~ 6944407 (+) True XLOC_001886
TCONS_00003723 mRNA upstream 124090 6884137 ~ 6905574 (+) False XLOC_001885
TCONS_00003724 mRNA upstream 124090 6884152 ~ 6905574 (+) False XLOC_001885
TCONS_00003722 mRNA upstream 124408 6884123 ~ 6905256 (+) False XLOC_001885
TCONS_00003727 mRNA upstream 124730 6884627 ~ 6904934 (+) False XLOC_001885
TCONS_00003735 mRNA downstream 21740 7255695 ~ 7264766 (+) False XLOC_001888
TCONS_00003736 mRNA downstream 21829 7255784 ~ 7264746 (+) True XLOC_001888
TCONS_00003737 mRNA downstream 329800 7563755 ~ 7565074 (+) False XLOC_001889
TCONS_00003738 mRNA downstream 330151 7564106 ~ 7565071 (+) True XLOC_001889
TCONS_00003740 mRNA downstream 351973 7585928 ~ 7588878 (+) True XLOC_001891
TCONS_00003693 other upstream 1260052 5744923 ~ 5769612 (+) False XLOC_001866
TCONS_00003679 other upstream 1877263 5151349 ~ 5152401 (+) True XLOC_001855
TCONS_00003675 other upstream 1882082 5135842 ~ 5147582 (+) True XLOC_001854
TCONS_00003668 other upstream 2042181 4986050 ~ 4987483 (+) True XLOC_001850
TCONS_00003658 other upstream 2536306 4493277 ~ 4493358 (+) True XLOC_001842
TCONS_00003739 other downstream 339361 7573316 ~ 7578051 (+) True XLOC_001890
TCONS_00003759 other downstream 1109233 8343188 ~ 8343305 (+) True XLOC_001906
TCONS_00003778 other downstream 1628566 8862521 ~ 8868895 (+) True XLOC_001921
TCONS_00003779 other downstream 1635513 8869468 ~ 8880126 (+) False XLOC_001922
TCONS_00003791 other downstream 2112441 9346396 ~ 9348506 (+) False XLOC_001931

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000304_01054942_01133130.mRNA True 2583 mRNA 0.53 14 CI01000304 1054942 ~ 1133130 (-)