RNA id: CI01000304_01054942_01133130.mRNA


Basic Information

Item Value
RNA id CI01000304_01054942_01133130.mRNA
length 2583
RNA type mRNA
GC content 0.53
exon number 14
gene id CI01000304_01054942_01133130
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 1054942 ~ 1133130 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATGATCCCCTGCAACGGACAAAGCGAAACCTCGCCGTTACAAGTGGATATGGCCAAGCAGGGCCTAGACCTTCAGAACGGCCAGTCTGAGTTAGCAGGAGACTCTCTCCTGACGTCTGGTCTGCTGTTCGACTCGTGGTGTGAGGCGCTCATAAAGGATCCTAGCTCAGTTATGGCGGCCGCAAACGAGCTGAGCTGCTTCAGCACTGGGCCCGTACGGGACCTTAGGAATGCATCGGCCAGCCAAAATAAACCTGACGCCAGCCCGACTCCAGTTGCAGTGCACATAGAGCCATCTGTAGAGGTGCCCTCCCAAGAAAATGCTGGAAAAGAGACGGAGGGCAAGAGGGCAGGGTCACCCTCTCCTAGTATGTCGGACGACCCCTCGGAAGAACTTATAGACAAGTCTCTAGAGGAATCCAATAAAATCCTGGCTGAGATCCCGGGCATCTTCAGCGGCTTTCTGGAAGGGGGCAAACTGCGGGACAAGCCACCGAAAAAGCTGCGGTTTGTGGAAAGCAAGGCAGAGAGTCTAGTGAATGGAGAGATGCAAAACGGAACACGCCAGAGCTGCAGCCTGAAAGAGGAAGTGACTCAGGACAGTCAGCATACAGAAGCCACAGGAGCGCCACAGGGGCGTGCGACTAGACCCGATCACAGACCAACAGAAAACGCCTCAGACAGGACTTCTGAAGGTAAATCTGCTGCAGGTGAGAGTGACGCCACAGATGTCTTCAGCTGCCAGTTTGAGAACATCCTGGAGTCGGAGCGTCTGCGAGCGACTCTCTACAGTAGCATGGACTCGCTGGACACCCTCTCCACCCCTGCACCTGAACCCACTTCTCAAACCGCTCCGGAGCCCTCATTTGCCTTCGACATTCCACTCACTCCCATGATTCAGCAGCGACTCAAAGACAGAAGTCTGTTCCTGGATTCCGGCGCACCGGGCCTGAGCTCTGACACTGAGGTGCTGAGCGTCACCACCATAAAGGAGAGCGGAAGGGCAGCTCTGGAGGTGACCTCATCGTTTCTCTCAGCGGGAGCAGCTCTAGCTAACGGTGTGAACCAGAGAGATCCTAGAGACTGGCTGCAGGGCTGTTTAAGCAGCGATGCAGGGCTGAAGGACGTGCTGTCGGACTGGGACTCAGACATGGATGGTGTGGATTGTCTTAAGGACACAGATGTTCTCCACAATGGCGGTCGGAGCGACCAGGAAGCTGCCCGACGTCTGGCCAAACGACTTTACCACCTGGAGGGCTTCCGACGCTCGGATGTCGCTAAACATCTGGGCAAGAATAATGACTTCAGTAAGATGGTTGCAGAAGAGTACCTCACATTCTTTGAGTTTACAGACCAGACATTGGACCAATCTCTCAGATGTTTTCTGAAAGCATTCTCACTAATGGGCGAGACTCAGGAGAGGGAGCGGGTGTTAATTCATTTCTCTAATCGGTACTATCAGTGTAATCCCACTGTCATCACTGCACAAGATGGAGTTCATTGCCTTACCTGTGCGCTAATGCTGCTCAACACTGACCTTCATGGCCCTAATATTGGGAAGAAGATGACGTGCCAAGAATTCATCAATAACCTGGACGGACTCAACGGAGGACAAGATTTCCCCCGGGAGCTGCTGAAGTCGTTGTATAACTCCATCAAGAATGAGAAGCTGGAATGGGCCGTTGATGGAGATGAGCTGAAGAAGTCTCTGTCTGAGCTGGCTGATAAGAACCATCACTCTAAGAGCATCAGTCGCATCAGCAGCGGCAGTAACCCGTTCCTGGACATCGCCCATGACCCTAACGCTGCCGTCTACAAAACTGGCTTCCTAACCCGCAAAATCCACGCTGACATGGACGGGAAGAAAACACCAAGAGGAAAGCGAGGGTGGAAAACATTTTATGCTGTTCTCAAAGGCATGATCCTCTATTTGCAGAAGGACGAATATAAGCCGGAGAAGGCTCTATCAGAGGACGATCTAAAGAACGCCATCAGCGTGCATCACGCTCTCGCCATCAAGGCTATGGACTATGAGAAGAAGCCCAATGTTCTCAAGCTCAAGACTGCTGACTGGAGAGTTTTCCTCTTCCAAGCCCAGAGCCCTGAGGAAATGGAGTCCTGGATTGGAATAATCAACTCAGTGGCGGCCATGTTTTCGGCCCCGTCCTTCCCCGCTGCCATTGGCTCTCAGAAAAAATTCAGCCGCCCGCTGCTGCCAGCGACCACCACCCGAATGTCTCAGGAAGAGCAGCTCAAGTCCCACGAGGCCAAGCTGAAGCACGTCTCTACAGAGTTAGCCGAGCACAGATCCTACCCTCCAGATAAGAAGGTCAAAGCCAAAGAGATCGATGAGTACCGCTTGAAAGAGCACTACCTAGAATTTGAGGAGAGCCGTTACGAGATGTACGTGAAGCTCCTGAAAGAGGGGGTGAAAGAGCTCCTGACGGCCAGGGATGGTGACACAGCGCTGAAGAAGTCTCAGTCCAGCCCCTCTCTCAACCAAGAATCTCAGCCGGCCACCGCCAAAGTCAAGCGCAACACATCCGAGCGGAAGGATTACCGGCCCGAAACGCCCAAGGTTACA

Function

GO: NA

KEGG:

id description
K12494 PSD; PH and SEC7 domain-containing protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU480862 lncRNA downstream 34001 1020657 ~ 1020941 (-) True G418629
TU480823 lncRNA downstream 34895 963739 ~ 1020047 (-) True G418590
TU480826 lncRNA upstream 39068 1172198 ~ 1172813 (-) True G418593
TU480828 lncRNA upstream 40051 1173181 ~ 1175223 (-) True G418595
TU480880 lncRNA upstream 42637 1175767 ~ 1176008 (-) True G418647
TU480827 lncRNA upstream 44651 1177781 ~ 1178694 (-) True G418594
TU480822 lncRNA upstream 49745 1182875 ~ 1184560 (-) True G418589
CI01000304_01030191_01033191.mRNA mRNA downstream 21751 1029172 ~ 1033191 (-) True CI01000304_01030191_01033191
CI01000304_00877256_00878179.mRNA mRNA downstream 176763 876134 ~ 878179 (-) True CI01000304_00877256_00878179
CI01000304_00862451_00870277.mRNA mRNA downstream 182513 862153 ~ 872429 (-) True CI01000304_00862451_00870277
CI01000304_00852998_00861119.mRNA mRNA downstream 193575 852946 ~ 861367 (-) True CI01000304_00852998_00861119
CI01000304_00843412_00844705.mRNA mRNA downstream 210237 843295 ~ 844705 (-) True CI01000304_00843412_00844705
CI01000304_01186035_01200177.mRNA mRNA upstream 52731 1185861 ~ 1200808 (-) True CI01000304_01186035_01200177
CI01000304_01216763_01232729.mRNA mRNA upstream 83586 1216716 ~ 1232729 (-) True CI01000304_01216763_01232729
CI01000304_01365055_01365447.mRNA mRNA upstream 231671 1364801 ~ 1365447 (-) False CI01000304_01365055_01365447
CI01000304_01403041_01410830.mRNA mRNA upstream 269762 1402892 ~ 1410830 (-) True CI01000304_01403041_01410830
CI01000304_01416856_01418996.mRNA mRNA upstream 283519 1416649 ~ 1419347 (-) True CI01000304_01416856_01418996
TU481692 other upstream 1096254 2229384 ~ 2236106 (-) False G419353
TU481693 other upstream 1096254 2229384 ~ 2236106 (-) False G419353
TU481701 other upstream 1129372 2262502 ~ 2265185 (-) False G419354
TU481700 other upstream 1129608 2262738 ~ 2265340 (-) False G419354
TU481699 other upstream 1129962 2263092 ~ 2265185 (-) False G419354

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00003729 False 5460 mRNA 0.45 15 NC_007121.7 7029664 ~ 7233955 (+)
bowfin (Amia calva) AMCG00010641 True 645 mRNA 0.53 6 CM030129.1 37960752 ~ 37971680 (+)