RNA id: CI01000304_00843412_00844705.mRNA


Basic Information

Item Value
RNA id CI01000304_00843412_00844705.mRNA
length 528
RNA type mRNA
GC content 0.49
exon number 3
gene id CI01000304_00843412_00844705
representative True

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 843295 ~ 844705 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTCCGCAGCTGCAGAAGCAGATCTGTGATCATGGCGGATGAGGTGTCGCGAGCTCAGAGCGCGCAGCCGGGAGGAGACACGATATTCGGCAAAATCATCCGTAAAGAGATTCCTGCCAACATCATTTATGAAGATGATCAGTGTATTGCCTTCCATGACGTGGCCCCTCAGGCTCCCACTCACTTCCTGGTGGTCCCCAGAAAGGCCATCACTCAGATCTCTAAAGTAGAGGACGCTGATAAAGAGCTGCTCGGACACCTGATGATGGTTGCTAAGAAGTGTGCTGAGCAGGTGGGTTTACCCAGAGGATACCGACTGGTGCTCAATGAGGGTCCCGACGGTGGTCAGTCCGTTTACCATGTTCACATCCATGTCCTGGGTGGCCGTCAGCTGGGATGGCCTCCTGGATAACCACTTTATAGCTAGTCGTGTCATTGTTTGCCATAACTGAGGTTAAATGTTAAATGTCATTTAGGAATCACTAAAGAAAACAACTGAAATTAAGTTCTGACTGAGGATGTCAATAAA

Function

GO:

id name namespace
GO:0005575 cellular_component cellular_component

KEGG:

id description
K02503 HINT1, hinT, hit; histidine triad (HIT) family protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU480773 lncRNA downstream 3938 838856 ~ 839357 (-) True G418563
TU480768 lncRNA downstream 9133 833946 ~ 834162 (-) True G418558
TU480766 lncRNA downstream 14452 828514 ~ 828843 (-) True G418556
TU480703 lncRNA downstream 106223 736869 ~ 737072 (-) True G418499
TU480615 lncRNA downstream 115991 727009 ~ 727304 (-) True G418423
TU480739 lncRNA upstream 27967 872672 ~ 875306 (-) True G418530
TU480778 lncRNA upstream 41101 885806 ~ 889909 (-) True G418567
TU480785 lncRNA upstream 58137 902842 ~ 905854 (-) False G418573
TU480786 lncRNA upstream 60205 904910 ~ 905854 (-) True G418573
TU480793 lncRNA upstream 64935 909640 ~ 916578 (-) False G418576
CI01000304_00748608_00750261.mRNA mRNA downstream 91763 748315 ~ 751532 (-) True CI01000304_00748608_00750261
CI01000304_00682765_00692613.mRNA mRNA downstream 150639 682509 ~ 692656 (-) True CI01000304_00682765_00692613
CI01000304_00670372_00671143.mRNA mRNA downstream 172152 669276 ~ 671143 (-) True CI01000304_00670372_00671143
CI01000304_00348539_00351333.mRNA mRNA downstream 491962 348495 ~ 351333 (-) False CI01000304_00348539_00351333
CI01000304_00167148_00268194.mRNA mRNA downstream 575101 167148 ~ 268194 (-) True CI01000304_00167148_00268194
CI01000304_00852998_00861119.mRNA mRNA upstream 8241 852946 ~ 861367 (-) True CI01000304_00852998_00861119
CI01000304_00862451_00870277.mRNA mRNA upstream 17448 862153 ~ 872429 (-) True CI01000304_00862451_00870277
CI01000304_00877256_00878179.mRNA mRNA upstream 31429 876134 ~ 878179 (-) True CI01000304_00877256_00878179
CI01000304_01030191_01033191.mRNA mRNA upstream 184467 1029172 ~ 1033191 (-) True CI01000304_01030191_01033191
CI01000304_01054942_01133130.mRNA mRNA upstream 210237 1054942 ~ 1133130 (-) True CI01000304_01054942_01133130
TU481692 other upstream 1384679 2229384 ~ 2236106 (-) False G419353
TU481693 other upstream 1384679 2229384 ~ 2236106 (-) False G419353
TU481701 other upstream 1417797 2262502 ~ 2265185 (-) False G419354
TU481700 other upstream 1418033 2262738 ~ 2265340 (-) False G419354
TU481699 other upstream 1418387 2263092 ~ 2265185 (-) False G419354

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00003744 True 564 mRNA 0.48 3 NC_007121.7 7636811 ~ 7640797 (+)