RNA id: XM_021618102.2


Basic Information

Item Value
RNA id XM_021618102.2
length 9039
RNA type mRNA
GC content 0.46
exon number 11
gene id LOC110533666
representative True

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 32933731 ~ 32952352 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGAAGTACTTTTCTCGTGTGGCTGACAAGACTGATGTTCTTCCTGATTTATGAACACACAGGCAACTAACTACACCACGCAACAAATTAACTTTTTCCGGAATTAAATAATGAACTTAGCTACAAAGTTAATTTCAAGACGTTGTGCTAATATTGAGCTAAAGATTAAAAACGGGTGGATTTCTGATTAATTTCACGATGCACGACTTCTGAACGACCAGTGAGTGCATGGATCCCAAAATGCCCAAGCGCTGTGCCGCACCAAATTGTAATATCTACACAGATAAATCAGACGTCCCCTTTTTCAGATTCCCTTTGGACCCGGAGGGATGTAAACAATGGTTGAATAATTGTCATCGAACTGACTTGGAGCCAAAAACCCCTGAGGAGTTGCACAATTCCTTCAAAATATGTGCAAATCATTTTGAGCCTTCCTTGATCTGTTGTGATAGCACTTTAAGAACATCCTTGAAAGAGGGTGCTATGCCAACCATATTTGATTTTACAACACATTTGAACAATCCATCAGGCCGCAACGGGAATAAGAGAATAAGAGAACCTAGTGAGGCGGAGTTTGCAACCTCGAAGAAAGCTAAAGATGCTCCAACTGAGGTGAAAGATAAGCCAGGAGAGAATAGTGCAACATGTGATCTACCGCAAGAGGACCAAAGGAGAGAGGATGTCTCCAACTCCAAAGCAAAGGAAATCCTTAAAGTCTACTTCAAGGAAACTCTTGCCTTCACTGGATTCAGCATAGGGAACGATGCAAACCCCAACACTGATGAGCCGATGGGAGGCCACAGGGGACAACAGTCTCTCAACCCCATCTGTGTTGAAAGAATTGACCAGAAAGATGTCCTCCAGTTCAGTGAGAACCTCATGCGGGAGGAGATCCGGAACAGTTTAAGGTTGGCACGCTTTTTCTCCATTCTGCTGCAAGATGTCACAAACATAGAGGGAAAAGATCAGATCCCAGTTTTCATCAGGTCCGTCACTGTGGCAGGTTTCCCTCAGAAACACCTCATGGGGTTCCTGCCCTGTGATGCAGATTCTGAGGGTCTGTTTTACATGCTGCTCTCAGAAATACGGAATAAGTGGGGGCTGCGGATGGAGCATTGTCGAGGACTTACCTACCTGACCACAGGCATTCTATGTCAGAAAATGAAGGATCTCACCAGCAGGATTTTGCAGGAGTTTCCTCAGGTAGTGCTAGCACCTAGTGACCCATACGCCTTTAACATGTGGCTCATCCGCTCCATGCCCATGCCTTCCATACAGAAGGTTGTGAACACAGTGGAGGAGGTCGCCACAATGCTTAGAGGGTCCCCAGATCTTTGGGAAAGACTGGAAGGGAAGATCAAGTCATCTTACGGCCACCTTAAAGGTGAAGTggacaggatcacagaggcttGCCAGAACACCTGGGAGTATGGTGTTGATGCCTTCCACACCATGTTGGACATTCTTGAGCCATTCCTCGCCTGCATCAATGAGGTGTGCTCGGCTGCAAACGCAGACACTGCTATTTGTGAGCAGATGGCCAAGCTCAAGCCGATCCTAAAGAACTTCAATTTCCTCATCACCCTGGTTGTCCTGAAGAATACCCTCTGTTGTGTGAGCATCCTCAACCCGAGTCTCAGGGGAGCCATCAGCATCAGCAGCACCTTGCAGTACACAATCTCCAACGCCTTAAAGCTGGTCAACAAACATCTGCAGGAGATAGCAATATTCCACAGGAAGTGGTTTTCTGATGCAGTGGGCAGGGCTAAAAAGCTGGGAGTGGAGGTCGCTAGGCCGGAGGAGAACTCACCTGATACTGGTGAGGCAGGTGCAACTGAAACCTCTCTGGAGGATTTCTACAGAGAGACTCTGAGCAGGCAGATCTTACAGTACCTTGTTGCGGAGGTAAAGAGGGTGTTTAGCACTGAGATGGTTCGGATTCTGAGATGGCTCTCGTTGGTGCCGTCTTATATGGCTGACCACAATTTCAGTATCCGCAGGGATAAAGTGGCGGATGCGAACTTGAACAACCTCGCTCGACCCGACACGTTTTACGATGAGCTTGGTTGCTGGGAGGTGAAGTGGAGACATGCTAGCAAGCGGAGGATCCTACCCACAACAGTGTTTGCAACATTGAAAATCCCAGACATTGCATTTTACCCAAATGTGCAGAGCCTGCTGAGAGTTCTGGGCACCATCCCCTGTGTGAACGCAGAGGCAGACGTCTATGGGCAGTACAACATGGTGCTGGAGCGGTACCAGTCTTACCTGAAAGCCACACCGGAGGATCAGAGACTGTGCAACATGGCATTTGTCTATGTCAATCAAGATGTGCACTTCAATGTTGAAGACATGGTGGAGTCCTATGTGGAGAAGCATCCTGACATATTGCAGTTGTTGCATATGGATGATGAGGTGATGGAGATTCACTCTGCAGCTGAACCAGACTCTGAGAATGATGGAAAACACACTCTAAAAGAGAATGTTGATGAAACACAAAAAGAACCACAGGAAATGGTcttagaggtggagagagtggagcAACCGAAATGCGTAGCCTCAGAGACTAATAAGGAGGCGCTCAAATCTGCTCTACAGGCTGCTGTGACAGCGGCATATAACAGCCAGAGCAGACAGCCTGGTGAGGCCTCTGCTGAACAGGATGGCGAGGTTGAAGACACATTGAAATATGTATCGAAGTCTGAGATGAAAGAAGTTCTCAGAGTATGCGAGGATGCAGTCAGGGAGGAAATACTTTTGGAAGTTGGCACTTCCTTTTTCTCTCTGTTCATCGACCGCGTTGTGAAGTTAGGGGAGAAAAAATATCTTCCCCTCTTCCTCAGGTTTGTGGACAGTTTTGATGTCATGCGATTGGAGCTCATGGGTTTTCTGGATGTGGATCTTGACTGCGATGCCATGTCAGAGCGCATATTGGAAATTGTCACCAAAGAGTGGTGTCTCGATTTGTGTTACTGCAGAGGTCAAGCCTACCTAGGATCCGGTGATGTCTCCTACAAGCTGAAAGCCTTTGCCTGTAAAATCCAGGAAAAGTACCCCCTTGCAATATGCACACACAGCTCTTGTTACTCGTTTAACACATGGTGGTCAAAATCCACCCCTGTGCCGTCAGTCAAACGGGCCCTGGATGTTTTTGAGGAGGTGTTGATGTTTTTTGGGAGCACGCCTATGCTTGAGAAACAGCTGGATCATGTCATTGCATTTGGTCTTAGGGAAAGCTATGAAAAGGTTCAAGAATTGCAGGGTAAGTTCTGTACCGTCTGGCAGGAGAAGCACGATTCCTATGAAGTCTTTGTGCAGATGCTGGAGCCCCTTGTTGAATGTTTGGAGAAAATCAAGACCAACCCACAGAGATGGAAATCCTCACTCTCTCTAAAAGCTAGAGCACTGCTGCGTTTGATAAGGGACTTTGATTTCATTGTTCCCATGGTAGCCCTGAAGAATGCCTCGTCCTTTACCAGGGAGCTGAGTGCAGGACTCCAGAAGGATCATTTTAGCGCAGCATCACAGCTTTGCCAGATCAGTGGTATAGTGGCTACTCTCAACAGGGTCAAAACAAACATCAAGGTCTTTCACCAGAATTGGTTCGATGAAGCCTGTGCCCTTGCCCAGAGTCTGGCTGTGCAGATAAAAGTGCCTGATAATTCATCTGCGGCCAGGGATAGCATGATCAAGCCAGCTCTGTATTACAAAGATTCACTGAGTGTGCCCCTAGTGGACAACCTCACCAATGCTGTTAAGGATCATTTCTCTGAGGACCACAAGGAGGCCCTAAACTTCTTATCCCTGGTTCCCTGCTCTGTGACTGTGAGTTACATGTTTGAGATCCTGAGGTCAAAGCCTCCTCTCTACGCCAGTGATCTGCCTGACTCTGACAACTTCTTCACAGAGTTGTGCTGCTGGAGGGTGAAGTGGAAGACCAAAGTTGCGTCAGTGACCATCCCAGACACCATCTTTCAGACTCTCCGTCTGCCACTCATGCAATACTTTGGGAACATCAATACACTGCTGAGGATCATGTCTGTGTTACCCAGCACAGTACTGGAGAACTGTGGGGAAGCGATGCGCCACAAGATGTTCCAGGAATACCTGAGGAACACCAGCTCCAAGGACAGGTCCCCGTGTCTGGCCATGCTGCAGGTGGGAACCAACTTCAGCAGAGATTTGGACCGGATGGTGACTAAGTGCTTGAAGGTCACTCCCCAGGCTTTAGAGGGTTTCTGCTTGGATAAGGAATCCAAAAGTCTGATGAAGAACTCTGAAGCCAACATGGAAGTGGATCATGACAAAGATAGAACAGAGGAGCTTGAGAATCAACAGTCTTCTGACAAGAAAAAAGACCAAGAAAGGAAAGCAGTGGATGAGAATGGGCACACTGGAGATAATCGACAGAGTTTAGAAGCAGTGTTCAGACAGGCTGCACGTTTGGGGAAAAATAAGTGCCAGCTTTCCGAACTCTCCAAAGAAGATCAAGACCTTCTCATCCAGGATCTCGGCATGTGCCACTGGTTTGGAAGAGATGGGAAGTTCACATGTAAAATAGGAGAGGAGGAAATGGTACAGCTTCTTACAAAATCCATCAGGGAAGTCATACTCTCAGAAATACAGGAGTCCCCCTTCTTTTCTCTTATCACAGATAAACCTGTTGTAATTGCTAATAAGAGCTATCTGCCTGTCTTTGTCAGATATGTTGGGCAATGTGCCCCCAAGGTAGAGCTCATTGGTTTTTTGCGATTTTTTGAATCCTGTGACGTTGATGTTCAAGCCAAGAATCTCTCTACGACTCTAACTGAAGACTGGGGATTGCCGATGAGTCAGTGTCGTGGACAAGCAATCATGCGCATGGGCTCAGGTTGTCACAGCCTGAAGAAGATGTCTTTGGAGTTCCTTGAGAGCTATCCTCTGTCTGTCATCACACCCAGTGAGTCTTGTGGTCTTGCCTGTTGGCTAGCAGGAAGCGTACACTGCCCACCTGTCACAAAGATGCTGCGAATTGTGGAAGACCTCCTACTGTTTTTTGACCAGTCACCTGGTCTAGAGGCAGAGCTAGCACAGGCCGTGGATGGGTTACTGAATACACCTCGGGAGGCCTTGGATGAGATTCCAGAAACTTGTTGCTCCAGGTGGAAGAAGAGGGAGGACTTTTTTGATCTCCTAGTCGACACATTGGAGGGAGTCTTGAGTTGCTTGGATTCAGTTAGTGCCCATGATGCCGGAACTATGTCGCTACATGCACAGGTTCTCGCCACTGCTTTGCGAGATGCAGATTTTGTCATCACACTTGTGATCCTGAAGAATGCCTGTTCTCCTCTTCGGAACTGCAGCACTGTCTTCCGCTGTGGTAACCCTGCTGACATCATCTGTGAAGTGGAGAAGATAGTACCAATCATTGAAACGCTGAGCAAGATGCTGGATAACATAAGCTCTGTACATTCACCTTGGTTTGAGGAAGCATTCCAACTAGCATCCAAGGTGGCCCCTCAGCAAGTATGTTTCCCAGAGAAAGCTAACTCTTATGGGTCTCCAGAGATGTACTACAGGGACAACTTGAGTGCTCCTCTACTGAGCAGCCTCGTTGATGAAATGAAGTACAACTTCTCCGACAGTCACTTAAAAGCCCTGAAGATCTTGTCTCTGCTCCCCACCTGCAATCCACAGCCCATTTCAGAGCCAATCCGCGCAGAGTCAACAGACAAGCTATACAGTCTCTACCTGTCTGACCTCCCTGACCCTGACACAGTAGAGCAGGATATCAGTAACTGGGCCTCTGTCTGGAAAGAGAAATATCAAGACCTCTCACCACCAGCTTCTATCTCTGAGATACTGCTTCACGCTGAGTCTCAATGCCACCCCACAGTGACCAGACTGCTTAGACTGGTGGCTGTTCTACCGAGCGTCAGTATGGAGTGGGACCTGATGAAGACCACCCTGAACTCCATGAGGGCTCTGCTGAAGAACACCGTCTGCAAGGGCAGTAAAACAGACACTGTGATGCTTCTTATGCATTACCCAACTGTTCAAAGACTAGGGGAGGTCATTGAGAAGTGCATAGAAGTTGACCCAGAAAGCAGCCCATGTCTTGAGCAGGTGAAGAAACAAATTGAAGGTCTGAAGCTGGAAAGTGATTTTAGAGCTTTGGATGTAAACCCTGATGGAAGACATGAGCAGGCAGTTGAGGAACACCAAGCTGGTACGTCAGATCAACTCCCTGCAGGAAAGCTGAAGGCAGAGGAGGCGGCAGAGTACTATGTGAAAGTGGAAGATGCTGTGATAAAGGCAGACATTGTGATCGCTGAGGACGTTGTGATCGCTGAGGACGTTGTGGGGGCCGGGGGCGGTGGGAAAGTAGAAGTCTGCGTGATAACAGAGGAAGTCATGTTTGCAGAGGACGATGTAAAAGCAGTGGACATTGTGTTAGCCGAGGACGGCGTGAAGGCAGAGGACAGTATTGTGATAGTAGAGGATGGGGTCATAGGTCAGAAGCAGGCCATGTCTTTCTACGACCCACCTGTGCGTGAGGAAATCCTCAAGGAACTCTGGGACTCACAGTTCTTTACAATAATAACGGAACGGGCAGTTGAGATCGAGGGACAGCTCTACGTCCCCCTGTGCATCAGGTACTTGGAAAAACAGGACACTCAGTGCGAGGAGACTGTAGCTTTCATCCCATTCAGCCAGGACACTGCTGTCTTGGCTGATGCTATTGAAACAGCCTTATCAGAGAAATTGGGGCTCAACATGGAGTACTGTAGAGGGCAAGCTTTGCTAAGTGTAGGTGAGGTAGGGTCTCAGATGAGGGCTGTTTCTGCTGTAATATCCCAGAAATACCCCCTGGCCATGCGAACAGTCAGCGCTGCTCTCTCTCTGAATGTGTGGCTAGCCAGGTCATCTCCTGCAGTGGCAGCAGCAGACTGTGCAGCGTCTGTAGAAAACATGTTACAATGGCTCACAGAGGACACAGAACGACAGACCAAACTGGAGGACATGATCATTGCCATGTTCCAACATGATGAGGGGAAGGGTAATGAGCATAGGGACAAGCTTATTAAGAACTGGGAGAAAAGTCATGAAATGCATGAGTTGATGGTAGAGCTTCTTGAGGTAGTGATGCTGTGCTTGAATGAGCAGAAAAGTGAGGAGAGTAGCTCAGGAAGTGGCCAAGCACTGCTTTACTTCAATAAAGTCAGAAGTTTTGAGTTCATCTTCTCGGCTGTTGTGCTGAAGAATGTCCTGAGTTTGACCAAAAAGCTGAGCCAATCTCTTCAGGGCAAACCTCTAGATGTGTTGCTAGCTATGAATAGCTTGCCTGACCTCCTAACTTCCCTCAATGAATTGAAGAGCGATATCGACACACATCATAAGGCCTGGTATGAGGAAGCTGTCGCTTTAGCTTCCAAGCTGCAGATAACGCTGTTGCACTCTGGGCTACTAGAACCCCTGAGTCAGTTTTACAAAATGGCGGTGAGTCAGAAAGTGGTAGAGCACTCCATTGTTGAGGTCAGTGAGCTCTTCACAGAGAAGGTCCTCAGTACCCTGAGGTGCCTGGAGATTGTGCCTTATGCCATGTCAAAGGTGGAAAACAGCAGTGTAAATGCCCACCTTTTCCGCGTGTATAAAGATGACATGCCTGACATGGCCTCACTCCACACAGAGATGAAGTCTTGGAGAGAGAAGTGGTTGGATCCCATGTCTGGGTATCTTCCAGCCACTGTGCTCGACACTCTGAAGGCATCAGACATTAGGAGCTTTAGTAACATTGAAACCCTCCTAAGGCTCCTTGTCATATTACCATTTTCCCGGAGGGAGAGTACCTTCAGGCAGGGAAAGAGAAGCCTCCAGGGTTTCATACAGCAGGAGACCAGGTCTCTTTCTGAACTTCATCCTCTGTAAAACGTTGGTGTTCCCTCAAGCTCTCATTAGCATAAAGCAGGTTTCTGAGTTGGTGTCCTATACTGCTGACCCACTGTATCTTTGAGTAAATATCCAACCTAATTTAGGTCTCAATCCAGTTTTTAACTTACTAGAAGACATTTCCCTGCATACATGAATGATCTAAATATTTTGATCATTTTATTTGTTTTCCTGCAAgcgtatatattttttgtttgatTAAGTTGTTTGGATAATTGTACTGCCTAATGGGACCAATGTCTTGCCAAAAATAGCAATGCTCACCTGCGGGTTACCAATGCGTGTGTGCCTTTATGCATAACTAACAGTCAACCCAATGAACCATATGAATTCAGATGTCTGAAAATGACACAGTCCCATCAGGCTTTTTGAAATAACTTTTATTTTTGTCAGCACCAAATAACATTGGACTGAATTTAAAGAATCACGTGCATCAATTCACTGTCAATGAATAAGTTATCATTCTCTTCCTTGGCACAAATGGAAATGGTTAGTTCTATCATGTAGATGTTTTATGATGATTTCCTAGGTTTTCTGTCTATTTAGGAGAGTTCATTTTCTGTAAAGAATTCTCCAAATACTGTCTCCTTAAGAGTTAAACATTCATATATATTTGtccaaaaaaataataaaaagttatAAAAAGACCCAATGTTCTTATTGTAAATAACTTATCACATTGCAGTGTTAGGCCTACCATAATGAGTAAATTGATTTTCATGAGTCACAAGAGGGCGCTATAAGCTTGAATTATTTTGAGGAAATTTTATTGTAATTTAATTTAGGCTATATTAAGAGTACCCTTGTCTTTATTCATATAGAAAATGTTTGATTATAAAGCATGTTTTAATGAAGTAGTttgatgttttttgttgttgtcagacTTCAGATGAATACAGCTGTCCGCTCTGTTGAGGATTGGAGAATGTAAGAATTGCCACACCTTTGATATGGGATCCAAGGCCATATAAACCATAAAGCTTGCTGTATATCTTACCGGTTTACCATCTTTAATGGGAATATCACAATCTTAGTGTCATGAAGTGATGAGTGATCATTGAGTGATGGTGTCTACTGCTTAATGGATATTATTAAAGACAAATCAATCAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1001178 lncRNA downstream 119294 32814206 ~ 32814437 (-) True G879784
TU1001176 lncRNA downstream 120716 32812765 ~ 32813015 (-) True G879782
TU1001174 lncRNA downstream 121200 32812314 ~ 32812531 (-) True G879780
TU1001155 lncRNA downstream 144821 32788673 ~ 32788910 (-) True G879761
TU1001150 lncRNA downstream 151107 32782402 ~ 32782624 (-) True G879756
TU1002149 lncRNA upstream 1298 32953650 ~ 32956110 (-) True G880694
TU1002150 lncRNA upstream 4653 32957005 ~ 32957524 (-) True G880695
TU1002160 lncRNA upstream 67020 33019372 ~ 33027278 (-) True G880705
TU1002168 lncRNA upstream 75300 33027652 ~ 33028273 (-) True G880713
TU1002170 lncRNA upstream 76991 33029343 ~ 33029974 (-) True G880714
XM_021618098.2 mRNA downstream 22465 32876239 ~ 32911266 (-) True LOC110533665
XM_036990077.1 mRNA downstream 376339 32524426 ~ 32557392 (-) False LOC110533661
XM_021618089.2 mRNA downstream 376341 32526848 ~ 32557390 (-) True LOC110533661
XR_002475011.2 mRNA downstream 376342 32526848 ~ 32557389 (-) False LOC110533661
XM_021618085.2 mRNA downstream 436992 32488327 ~ 32496739 (-) True LOC110533656
XM_021618103.2 mRNA upstream 8315 32960667 ~ 32967730 (-) False LOC110533667
XM_021618104.2 mRNA upstream 8315 32960667 ~ 32967754 (-) True LOC110533667
XM_021618105.2 mRNA upstream 21065 32973417 ~ 32977176 (-) False LOC110533668
XM_021618106.2 mRNA upstream 21444 32973796 ~ 32977176 (-) True LOC110533668
XM_021618107.2 mRNA upstream 31356 32983708 ~ 32992688 (-) True LOC110533669
TU1001157 other downstream 142929 32790367 ~ 32790802 (-) True G879763
TU1001001 other downstream 344893 32585891 ~ 32588838 (-) True G879617
TU1000800 other downstream 684518 32247011 ~ 32249213 (-) True LOC110533652
TU1000802 other downstream 707795 32225432 ~ 32225936 (-) True G879440
TU1000307 other downstream 1484568 31447482 ~ 31449163 (-) True G878962
TU1002175 other upstream 83811 33036163 ~ 33037668 (-) False G880718
TU1002177 other upstream 83811 33036163 ~ 33037668 (-) False G880718
TU1002179 other upstream 83811 33036163 ~ 33037883 (-) True G880718
TU1002241 other upstream 201618 33153970 ~ 33251521 (-) False LOC110533673
TU1002275 other upstream 210560 33162912 ~ 33165022 (-) False G880807

Expression Profile