RNA id: XM_021618089.2


Basic Information

Item Value
RNA id XM_021618089.2
length 4038
RNA type mRNA
GC content 0.45
exon number 4
gene id LOC110533661
representative True

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 32524426 ~ 32557392 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTTCCTTGCAGTGCACTATCATAGAGCAATGTGCATGACAGGACAGAACGAGCAGAGCTGAGAGCAGGGCAAAGGGAAAACATCAGCGAGAGGGGAGGTTGTAATAACGCTAATTAAGCATCCAATCTCTGTATTCGTAATATTTGCATCATGGATGTATAATTCCTCTATTTTCGCTAAACATCGTATCTTGCACCATTCAACAACTCGGACATTTTGTTCCTCATTTTGTTCCTTTAACAGAACACTGGTGCCCATCAAGAGcctaggagagacagagagtgccaTTGTATCGCGCGCAGGAACTAAGCTAAAGCCGACATCATGGCGTGGCCCTGCATCACCAGGGCGTGTTGTATGGCCCGCTTCTGGAACCAGCTGGACAAGGAGGACATTTCGGTGCCATTGGTTTTCACCAGATACGACGTCTCGGAGATGCAGCATCTTCAACTGCAGCACCAACAAAAACAGCCGCGTCACCAGGCACAGGCAAGCGCGGTCGACATAGAAACTCTACCCGCTCACGAGGACAAGGCGGTAGCGGCTTGTGAGCACCCCGCAACGGCAACCGCTGTGTCTGAGGAGCGCGCATGTGGTTCTGTAATGCGCCAAGACTTTAAGCACTGGAAAGTGCGCCCTGAGCCAAGCTGTAAACCTAAGAATGAATATCACACTCCCGAGACCCCTTTTAACAACAAGACACAATATCAGAAGGATTTCAAGCCATGGCCCATTCCGAAAAGGGACGACCATCCTTGGATTGCCAGGCccaatccctccatctccatcggCGGTGACTGTGTCCAGGATAGGTCCAAACACTACCATGCACACGCGGAAGTTGACAGTGGGGTGGAGAAAAGCGAAATTGCTGACAAAGTGCAAGAGAAAGAAATTATGGGAGGGAGTAAAAATAATCAAACTGCAGAGAAGGATGGTGAAAAGAAAGTTAGCATCAAAGTGGAGCGAGAAGACGCGGCAGGGGCCAGAAGCAGGGCGGCGTTAGATGCGCTAAACAGGCAGTTAAAACAGGAAGTTACAATTGGCAGCTCATACAAGACTGAGTTCAAGGCCCACAGGGATGTGAAGCCAGTGAAGCTGATCCGAGCCAAGTCCCAGTTCCTTCCCCCTGATGAGAAGACCAGCCTGGAGACCAGCTATAGTGCCACCTACAGGGGAGAGCAGGCCAAGAAGCAGCCCAATGACAACAAGGCTGTGGACAGGAGGAGGATACGTAGCCTGTACAATGAGCCCTACAAAGGGCTACAAGAGACCAAGGTTGAGAGGTCTAACAGTGCTCCCCGATCCAAACCCAAAAAGGCGGGCACCAGGTTAGCGAGCCAAGGGGACAAACCTGTGAAGAAGGCAAAAGAGCAGAAGCTGCAGGGCAGCACAGCACTGCGGGGCACCAAGAAGAAGACCTTGGAGAACCAGCCCACTGAGTCCAGGCCTGCGGAGATGGACAAGGAGAAAAGTAAAGAGATGAACAACAAACTGGCTGAGGCAAAAGAATCACCGTACTAACGAGGGGATGTGTGCATCCGCTTCCTCTGCTTCCTGATGCCACcgaccacccccctctctccgtctccatcTCAAGATTGCCATGGCTACCAATGAATGGCGTGTGCTATTGTTGCATGAGCTCACCGAATAACAATCCTGTGTAGGTTGGCTTCCAACTGAACAGATTGCTTTGTTGAGTTTATCAAGGATTTTTGGGAAAGAGAAAACCATGTAAATTGGCTCACTGAATGGACTTGATCTTTATAGCTGTAACTTGCTAAATGTATCCAAAGATAGATACTCATCTAGAATTATGGTCTGAAAATCTTTGATAAATGTGCAGCTTGGTATTTCTAGAGTGTATTGGTCCATGGCTGAGTGTGTGCCTGCTCTGTAGGTCCTGAATGCTGTCTTCCAGTGCACCCGGGCCTCCAAGTCTGTCTATAATCAGATTGCCATTACTAAGATGCTTTGTTAAACTTTGCCATCATTCCTGAATGAAATCTTATTTTGTAAACCGAATAACTGTTGATTGTGGATGATGTGGGAATGGTTTTGAGCAATGAATTGTCAGGTAAACATTTAAAACCTCATACTGTCTCATTCAAAGTGTTCTCTCTATTCACAGGAAAGTGAGTTAATCAAGTTATTTTAAAGGTCAGACAAGGATATCCTATTTCATCAACTTTGTTGCCAAACCAGGAGCCATCTGGGTTACAGTAACATGATGATGCATTACTAGACCAGTTATTTGCACAGCAGATAAATTAAATGTTACTATCATGAAATTATAATTACATTATCCATTTGCATAACTACATTACATGTCACTGAGTCACGATAGGAAATTGATATTGTAGCTCTGTGGTCATTAGCTATGCTTTCACCCAGACCATGCAGACTCTGTATAGATAAAGCCCAGTGGAGTGGCAGGATCACTTTCTAATCCTACATAGAGCAGCCTAACCTATAACCTCACACACCCCCGCCTAcagcccctcccctcctctcagacacacacacacagagccatggtTGACTGTAACCGACGTGATTAGGCCCCCATGGGACTAGCAGATGGGACCCCAGCAACACTATCACATCCCAGAGGTCTAAAGAGGTGCCTGGCTGGATGTGATATTAGTCCACACTAGTAGGAGCAGACTCATGGTTAAGGTTTTGGAATTATATGTcatttattatgttttatttattaatCTATTTGTTTGGGTATGAAACACTGATTACCACCTCTGCTAATACCTCTCTTTATTGAATAATAATGCAACTGTGATGTGATGGTAAGTTGAATGCTGGCTGTTTGGAATGCTTCTTTTTCTCAAATTattatctgtatgtgtctgtctaaCACAGGCCTCAAAGAACTGGCCTCTTCCACAACCAggtgtgtgtttaagtgtgtggaTTTGATTAGGTTGACAAGATTACGTGTAGATGTCAAGATTATATTCAACACATTCAACTTCATATCAATCTCTCTCTGCTGCCTTCCATGGCAATCTAAATATTGTAGGCATAGGCTAACAATGTAGAGCAACTTGATATTTCTCCCCTGTGATTTCATTGAATTAGGATAAGCAGCGAAACTCGATTCTATATTTGGTTTACATTTGTGTTATACTTCTGCATGTGTTTGCAGTTTCTTGAATGGGATAAAAATGAGTGAGCAAGGAAAATGATCTGTTTTACAAATGAAAACCTAATTATGTCAAAATTAATCAAGTTAGACCTCCCCTTTGTATTGGCTGTATAGTGCCAGTGGAGCTCTATTTGCTGTAAGTAATAGTATGTTACTAGACGTCTGCTTATGTCTTAGCTGACAGTAGTAAAGACCAGAAGAGCGTCTCAGACTCCTGGGATAGGATAGGCCTCAACAGAGCAGTGCGTTGTGCAGCACTTGTCTTGTCGTGGGTCAACCCCCACCTCCTCACACTCCCCAGTCTCTTTCTTGTGTTGTTGTAATCTATTGTGCTAGTCAGTGTcccctgactccctccctcccctcagttTTGAGAAATGGAGTGTGTTGTCTCTCCATTTGCCATGGTGGTGTCTTGGTTAGTATGTCACAATGAATCACCACACCGTATTCCACTCAGACTTAGCATGCGCCCACGGAGCAGAGAGCGAGGGGCATCTTATTAGCATTTTGCAGCCTTTGGTTGGGGAAGGGGGATGCTTTCTCTCGTAACACATGAAGGGGGATGCTTTCTCTCGTAACACAGGAAGGGGGATGCTTTCTCTCGTAACACAGGAAGGGGGATGCTTTCTCTTGTAAcacaggaaggggggggggggggggggcggggggtcaTACATGTAAAGTGCTGACACAACCCACCCAGTGATATCGATTTTGAATCCAAGCATTAGAAACAAAAGCTACAAATTGAAAGTAATAATGGAACAAAGAAATGTTGGGCCAATATATTTTACTGTGAAGTGCTTGTGTTTCTCTCTGCTTGCTCCTATTTACTGAAATATGAATAAATGCAAAAGCAGAAAAAGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1000956 lncRNA downstream 4387 32522239 ~ 32522461 (-) True G879580
TU1000932 lncRNA downstream 74731 32448953 ~ 32452117 (-) True G879557
TU1000885 lncRNA downstream 108581 32388469 ~ 32418267 (-) True G879515
TU1000815 lncRNA downstream 283601 32243021 ~ 32243247 (-) True G879453
TU1000723 lncRNA downstream 412567 32106240 ~ 32114281 (-) True G879371
TU1001005 lncRNA upstream 34075 32591465 ~ 32595689 (-) True G879619
TU1001008 lncRNA upstream 44443 32601833 ~ 32602619 (-) True G879622
TU1001009 lncRNA upstream 48261 32605651 ~ 32609567 (-) True G879623
TU1000995 lncRNA upstream 72957 32630347 ~ 32632526 (-) True G879615
TU1001024 lncRNA upstream 76050 32633440 ~ 32654345 (-) True G879636
XM_021618085.2 mRNA downstream 30109 32488327 ~ 32496739 (-) True LOC110533656
XM_036990076.1 mRNA downstream 33224 32488327 ~ 32493624 (-) False LOC110533656
XM_021618086.2 mRNA downstream 41287 32462559 ~ 32485561 (-) True LOC110533657
XM_036990075.1 mRNA downstream 79358 32432886 ~ 32447490 (-) True LOC110533655
XM_021618082.2 mRNA downstream 103968 32368686 ~ 32422880 (-) True LOC110533654
XM_021618098.2 mRNA upstream 318849 32876239 ~ 32911266 (-) True LOC110533665
XM_021618101.2 mRNA upstream 376341 32933731 ~ 32952351 (-) False LOC110533666
XM_021618099.2 mRNA upstream 376341 32933731 ~ 32952352 (-) False LOC110533666
XM_021618100.2 mRNA upstream 376341 32933731 ~ 32952352 (-) False LOC110533666
XM_021618102.2 mRNA upstream 376341 32933731 ~ 32952352 (-) True LOC110533666
TU1000800 other downstream 277635 32247011 ~ 32249213 (-) True LOC110533652
TU1000802 other downstream 300912 32225432 ~ 32225936 (-) True G879440
TU1000307 other downstream 1077685 31447482 ~ 31449163 (-) True G878962
TU998135 other downstream 2610343 29915367 ~ 29916505 (-) True LOC110533621
TU996256 other downstream 3541778 28941240 ~ 28985070 (-) True G875194
TU1001001 other upstream 28501 32585891 ~ 32588838 (-) True G879617
TU1001157 other upstream 232977 32790367 ~ 32790802 (-) True G879763
TU1002175 other upstream 478773 33036163 ~ 33037668 (-) False G880718
TU1002177 other upstream 478773 33036163 ~ 33037668 (-) False G880718
TU1002179 other upstream 478773 33036163 ~ 33037883 (-) True G880718

Expression Profile