RNA id: TU1000885


Basic Information

Item Value
RNA id TU1000885
length 201
lncRNA type sense_over
GC content 0.40
exon number 2
gene id G879515
representative True

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 32388469 ~ 32418267 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gactccccttttttctactgtgttattgacttgttaattgtttactccatgtgtaactctgtgttgtctgttcacactgctatgccttatcttggccaggtcgcaattgtaaatgagaacttgttctcaacttgcctacctggttaaataaaggtgaaataaaataaaactacaTCGCAGTGTtgtggcgtcactacagcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1000815 lncRNA downstream 145222 32243021 ~ 32243247 (-) True G879453
TU1000723 lncRNA downstream 274188 32106240 ~ 32114281 (-) True G879371
TU1000619 lncRNA downstream 411907 31929936 ~ 31976562 (-) True G879269
TU1000646 lncRNA downstream 416248 31970613 ~ 31972221 (-) True G879295
TU1000252 lncRNA downstream 1032072 31352071 ~ 31356397 (-) True G878917
TU1000932 lncRNA upstream 30686 32448953 ~ 32452117 (-) True G879557
TU1000956 lncRNA upstream 103972 32522239 ~ 32522461 (-) True G879580
TU1001005 lncRNA upstream 173198 32591465 ~ 32595689 (-) True G879619
TU1001008 lncRNA upstream 183566 32601833 ~ 32602619 (-) True G879622
TU1001009 lncRNA upstream 187384 32605651 ~ 32609567 (-) True G879623
XM_021618079.2 mRNA downstream 31823 32353917 ~ 32356646 (-) True LOC110533653
XM_021618080.2 mRNA downstream 32317 32353917 ~ 32356152 (-) False LOC110533653
XM_021618081.2 mRNA downstream 32389 32353917 ~ 32356080 (-) False LOC110533653
XM_036990073.1 mRNA downstream 35267 32246991 ~ 32353202 (-) False LOC110533652
XR_005053618.1 mRNA downstream 35267 32246991 ~ 32353202 (-) False LOC110533652
XM_036990075.1 mRNA upstream 14619 32432886 ~ 32447490 (-) True LOC110533655
XM_021618086.2 mRNA upstream 44292 32462559 ~ 32485561 (-) True LOC110533657
XM_036990076.1 mRNA upstream 70060 32488327 ~ 32493624 (-) False LOC110533656
XM_021618085.2 mRNA upstream 70060 32488327 ~ 32496739 (-) True LOC110533656
XM_036990077.1 mRNA upstream 106159 32524426 ~ 32557392 (-) False LOC110533661
TU1000800 other downstream 139256 32247011 ~ 32249213 (-) True LOC110533652
TU1000802 other downstream 162533 32225432 ~ 32225936 (-) True G879440
TU1000307 other downstream 939306 31447482 ~ 31449163 (-) True G878962
TU998135 other downstream 2471964 29915367 ~ 29916505 (-) True LOC110533621
TU996256 other downstream 3403399 28941240 ~ 28985070 (-) True G875194
TU1001001 other upstream 167624 32585891 ~ 32588838 (-) True G879617
TU1001157 other upstream 372100 32790367 ~ 32790802 (-) True G879763
TU1002175 other upstream 617896 33036163 ~ 33037668 (-) False G880718
TU1002177 other upstream 617896 33036163 ~ 33037668 (-) False G880718
TU1002179 other upstream 617896 33036163 ~ 33037883 (-) True G880718

Expression Profile