LOC110533655 (LOC106603528)


Basic Information

Item Value
gene id LOC110533655
gene name LOC106603528
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 32432886 ~ 32447490 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036990075.1
AAGAAGGAGGGGCCAGACTGAGTCAGGCAAGAGGGTGGAAAAAAACAAGGAAGGAAGCTCTCAGttggcatgtgtgtgtatgtttagttCTTCTGAATGTTTGTTAGAGGAAAAAATAAGGATTTGGGGATTTCAACACTATTAAAGCCTTTCTAAAGATGGATATGGATGTTCCGGACCCTTCCCATGGGAATATGGGGCTACTGAGAACCTTTGACTCCTCTGAGTTTGGGAGCTGGGAGAAGATAGGCTCGGGCGGATTTGGACAAGTATACAAAGTCCGGCATGTACAGTGGAAAACATGGCTGGCTATCAAGTGCCCTCCCTGCCTTCATGTAGATGACAAGGAGCGAGCAGAGCTGCTGGAAGAGGCTAAGAAGATGGAGGCGGCTAAGTTTCGCTACATCCTGCCAGTGTATGGGATCTGTGGGGACCCCCAGGGCCTGGTGATGGAGTACATGGAGACAGGCTCCCTGGAGACCCTGCTGGCTGCTGAGCCTCTGCCCTGGGAGCTGCGCTTCAGGATCATCCACGAGACGGCGGTGGGCATGAACTTCCTGCACTGCATGAGCCCACCCCTCCTGCACCTGGACCTAAAACCTGCCAACATCCTACTGGACGCACACTACCACGTCAAGATATCAGATTTTGGTCTGGCACGATGGAACGGCCTCTCTAGGGTTGATGAAATCAGCCGTGACGGGTTCTGTGGCACCATTGCCTACCTGCCGCCGGAGAGCATCATCGAGAAGGACAGGGTGTCAGAAACCAAGCATGACGTCTACAGCTTTTCCATAGTCATCTGGGGAATTCTCACACAAAAGAAACCTTACCAAGGGGAGAACAACATCCTGCAGATCATGGTGAAGGTGGTAAGAGGGGTGCGCCCTGACCTCAATGTTGTGCCCCGGAGTCGACCCCAGGCCTGCACGGGGTTCCTGTGCCTCATGCAACGCTGCTGGGCCCCCTCACCTGACACCAGACCCAGCTTCCAGGAAATCACATCAGAAACCGAGGAGCTGTGTTCTAAACCCCAAGAGGAGTCCAAGACCCAAACTCCTGAGCTCGAGAATAACCCCTGCCATGGACTACCCACTGACAAGaAACCGGTCAGGCCCAAATCAGCCATGCTGCCAGAGAAAGACTACAGCCTATCAGAGCTGCTGAGCCAGGTGGACTCTGGGATATCTCGGAGCTTTGACCGTGTGACAGAGGACTGCTGTCCCAGCAAAGACAACACCAGCAAGAGACTGTCAGGGATCTCCTCTGTAGACTCTGCCTTCTCCTCTCAAGActccatcaccctctcctttGAGAAAGAGAATAGCTGTGACTCAGGGGAGGTGCAGAGGAGGAAGCTGAGCGACGCCATCCGTACCAAAGACATGTCCAAGCTGATGAAGATCCTGCAGCCTCAGGACGTGGACCTCTTATTGGAGGGCGGCTGCAGCCTGCTCCACCACGCTGTCACACAGGCCAACGAGGAGGCCATCAAGTTTCTGCTCCTCAACCACGCCAACACCAACCTGGCCAACGCTCGCGGCTCCACCCCACTCCACCTGGCTACCGAGATGCACCTGAAGGGCCTGGCCGAGCTACTGCTGGGCCGTCGGAGCACCAACGCCAACGCTCGGGACGAGGACCAATACACGGCCCTGCACTGTGCTGCTCAGAACGGGGACGAGGCCATCACCCGCCTGCTGCTGGACCGCGGCGCCTCCATCAATGAGACGGACACCCAGGGACGTACACCTGCACACATTGCCTGTCAGCATGGCCAAGAGAACGTGGTCAGGGTGCTGCTGAGCCGAGGTGCAGACGTCCACGTGAAGGGCAGAGATGACTGGACGGCACTTCACCTGGCTGCCTGGCAGGGCCACCTGGGCATTGCCAAACTGCTGGTGAAGCAGGCTGGAGCGGATGTAGATGGGCAGACCACTGACGGGCGAACGCCGCTGCACCTGGCCTCCCAAAGGGGGCAGTACAGGGTGGCAAGGATCCTGATAGAGCTGGGGGCAGATGTCCACGTGACCTCCATGGGCTTCCACACCCCCCTGCACGTGGCGGCTGAGACAGGCCACACCAGCACCTCCCGCCTCCTGGTCAAGCACAATGCAGACATCCAGGCCCGGACTGACCAGGGTCTTACCGCCCTCCACCTCGCTGCCCAACGCGGCCACTTGCCCACAGTGAAGATGCTGATGGAGGAAGGGGCAGACCCCTACTGCACCAATCAGACCCTGCGTACCCCCTGCCACCTGGCGGCAGAAGGGGGCCACTGTGAGGTCTTCAAAGAGCTTCTGGTCCACTGCCCTGAGGCTATTAGTCTGTCAGACGAACAGGGCCTCACCCCTATGCACCTGGCTGTGAGGGGAGGCTATACAGATATCACCAGCATGCTTCTGGCCCAGGGGGTGGAACTATCACCGGAAGTACCACAGGACTCCATCTCCCAACATACACAAGAGTTACAACAGGACTCCATACCCCTGCCACAGGATGTACCACAGGACTCCTTCCCCCAGGACACCCTGCATCCAACAGCAGAGGACTGCCCAAAGCTCCTGGCTCGTAGGCCTAGCCAGTTGGCCTTGCGGCTCCAGAGAAAGGTTGTAATCTTGAAACTGACGGAGCGCGAGGGTAACGAATGTCCAGAGTCCTCCGCTGAGAGGAGGGAGTCACCCAGTGACTGGATTGTACAGAACTGTCCTTGAATTGAAAACAGTCAAGGGTATCTTCTATTCCCTTCCCCATTGATGTGATGGCAGAAGTGTCCAAGCTAAAGAGACCAGCTGTTGTATTGTGATTTGTTTTTTGTACATAGTATATTTGATTGATTGTGTGTTATTATTATGTCCGTCTTTGATTGATCATTCATTGCCAGATGTTATGATTATTTGGTGCTTTGGGCCTCTCAAAGCCCCTGTTATCTTACTTGGTATCTTGTCAGGGAAGGAATGCTTTAATGtaaatacactgtatatagaacAATGAGATCTTTTGGATCATCATTTACTTTTTTCCTTTCATGTTAAATATAGACTCCATGTCACGTTTTTCCCCTTAATAGTGTAACTTTTCTACTTTGCATATGCACAGTCGTACATTCATTGCCTTCTGTACAGTAAGAGAATGTTGACATCTGTGGAATGCTCATTTGTTTTTTCATTTCCCATCTACCCATCTACTCTAGCTGGTATGTTCATCCTGTCCATAAGTTATATTCTCTAATAAAACAAGTgtca

Function

NR:

description
receptor-interacting serine/threonine-protein kinase 4-like

GO: NA

KEGG:

id description
K08848 RIPK4; receptor-interacting serine/threonine-protein kinase 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036990075.1 True 3245 mRNA 0.54 8 32432886 32447490

Neighbor

gene id symbol gene type direction distance location
LOC110533654 LOC106603527 coding downstream 10006 32368686 ~ 32422880 (-)
LOC110533653 LOC106603526 coding downstream 76240 32353917 ~ 32356646 (-)
LOC110533652 LOC106603525 coding downstream 79684 32246991 ~ 32353202 (-)
LOC110533647 LOC106603522 coding downstream 1272376 31154471 ~ 31160510 (-)
LOC110534882 NA coding downstream 1410661 31021462 ~ 31022225 (-)
LOC110533657 LOC106567954 coding upstream 15069 32462559 ~ 32485561 (-)
LOC110533656 LOC106603531 coding upstream 40837 32488327 ~ 32496739 (-)
LOC110533661 LOC106603536 coding upstream 76936 32524426 ~ 32557392 (-)
LOC110533665 LOC106603540 coding upstream 428749 32876239 ~ 32911266 (-)
LOC110533666 LOC106603541 coding upstream 486241 32933731 ~ 32952352 (-)
G879515 NA non-coding downstream 14619 32388469 ~ 32418267 (-)
G879453 NA non-coding downstream 189639 32243021 ~ 32243247 (-)
G879371 NA non-coding downstream 318605 32106240 ~ 32114281 (-)
G879269 NA non-coding downstream 456324 31929936 ~ 31976562 (-)
G879295 NA non-coding downstream 460665 31970613 ~ 31972221 (-)
G879557 NA non-coding upstream 1463 32448953 ~ 32452117 (-)
G879580 NA non-coding upstream 74749 32522239 ~ 32522461 (-)
G879619 NA non-coding upstream 143975 32591465 ~ 32595689 (-)
G879622 NA non-coding upstream 154343 32601833 ~ 32602619 (-)
G879623 NA non-coding upstream 158161 32605651 ~ 32609567 (-)
G879440 LOC106603524 other downstream 206950 32225432 ~ 32225936 (-)
G878962 NA other downstream 983723 31447482 ~ 31449163 (-)
LOC110533621 NA other downstream 2516381 29906094 ~ 29922728 (-)
G875194 NA other downstream 3447816 28941240 ~ 28985070 (-)
G879617 NA other upstream 138401 32585891 ~ 32588838 (-)
G879763 NA other upstream 342877 32790367 ~ 32790802 (-)
G880718 LOC106603546 other upstream 588673 33036163 ~ 33037883 (-)
LOC110533673 NA other upstream 706480 33153970 ~ 33251521 (-)
G880807 NA other upstream 715422 33162912 ~ 33165022 (-)

Expression


Co-expression Network