LOC110533657 (LOC106567954)


Basic Information

Item Value
gene id LOC110533657
gene name LOC106567954
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 32462559 ~ 32485561 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021618086.2
TGGGAATAGCAGTTCATGCCACATCACATGACATTTGCAATTTTTCGATTTCGGTCATCGACGGTATCGGAGATGGTCTTCAAGCGTGTGATGGGGCTTTATAGATAAggacttcacaaaataatacatttgttTCGTCGTTTGAAGCCACGAATAACTTTCACTTGGCTTTACGCCATGGACGGCAAAAACGATTCATTGACATTACATTTTGGACTACGtgatattagctagctagataacttgCTAAATTAGCTACCGTTGACTTGTAATCTAAATGAGAGAAAGGTCTGATCCTACCTAGCCAATTTTTATGAAAAGCTCGTCGTTATGTGTAGTTAGCTGACTTACTGTTGTTGGCTAGCAATGCTAGGGGCTAGCTAGCAAACACAGACATACAATGGTGTGCAGCTAACGTTAGAGATGAGTGGAGCTTGCTCGAACTTGCTTGGTCTAACTTACTCAATGCTCCGTTATTTAGTAGGTAGCTAAGTTACTTGCATTAACTTTAAGGAAACCATTTATATTGCTTGCTTGTTAGCTACCTAGCTTTCTACTGCAGTTTTATAGACTTCCTTTAAGTCTATAGTTACTTATCTTGGGATATTTTAGTTGGATGTTGAGCCTCCATCAGTAACCACGATATTATTGACCAGATAAAAGGCTAACATTGCATAGAGTTACTTGTTCAGTGGTTGAACTTGTTGACAAGACTTGCTCTCATTGCTAATATAGCTGGATCCATAACTCAGTTAGATGGCAAACGTTAGCTAACTTCATTGTCTTGAATGACGGGGACTTAATTCAAAAGCGCATCAgaccatgtttttgtgctggtcttACTGTCAAGAGACAATTGTCATTAgttaaataaatagctagccagctatttAAGTCAGTTGCTGAGGATGACTGACCCAGAAAGTCCCCTTTCAAATTCTGTTTTGGGAGACTTGCAGTGGCTTTGCATGGTAACACTGTTCATTGCATCCAGCATTACATtgatactgtatctaatacagtaTTTTTACGACGATCTACGGATACAGAAGCCTGAGCAAAACAATGCGGTTTCGGAGGAAGCGGACGCTCTGTTGGGATGGGCGCTGTCACTGAAAAGCTGGAAAAGTCAATGGAGAGTTGCTTGGTGCAGAGCGTTGAATGACGAATCGAGGAAGTCTGGGAGCCCAGTGCAACTAACATTTGAAGAGGAGAGCCTTCAGTCATCAGAGCTGGTGGTTGGCCAAGTGTCCAGCTTTAAAAAATCTGCTGGTCAGAAGGTGGCACAATGCAAGGTTGTCGGGGACAGGCTTCAGTTCTCCCTCAGTGCATCACCATCAGCTATGTCTCCAGGAGAGCCCTGTAGGTACAGCATGAAGATATCGCCACTTGAAGTGCAGTTGGACTTGCAGATAAGGGAGGCTGAAGGAGAGGTCTGGGTGGGCTGGGGGGTGTCCCATCTGGAGACATGGGACCTGCAGCTCAGCCCCAGCTTCACACAGGACAATGCCACAGGCCCAAGTGTGGCTGCAGTAAAGGACGTGCTGAGACAGCTGCTGTGTGCGGCGCGTCCCTCCGTGATGCTGAGTTGCAGGCCTGCTCAGGCCACAGAGGTCAAGGAGGCCTGTAAGCAGGTGACATCACCACCCAAGCCCCCCCGCGCTCACGACTGGAAGCTGCTGGTGAAGAATATCCGAGTGACATGTAAGGAGCAGGAGGACGGTGCTGCAGGCAGAATGAATCCCCTGTGTGTGCTGCAGCTAGACGACCCTCCACAGAAACTCTCCACTTCAGTCCTACAAAACACAGCCAGCCCAGCCTGGGACCAGCCCTTCATCTTTGAGCTGAATGGACGATCAAAAGAGCTCAATATTCAGCTGCTGGATGATGGGAAACCTCAGGAGAACTCCTTAATGGGTCAAGTGTCTGTGCCTTTTCATCTGGTGAAGAAGCAACCCAAAGGACAGCAAACATTTGCCCTCATATCCAAAGACAAAGACCAAGTGACTGGGTCACTTACTGCTGAGTTTACCTACTTGGAACCTAGCGAGGTGCGGTCGTGGCAGCCCCCTACTCCAGCCCTCACTAAGAGAGTGGAAATGGACCGCACGGTCATGCCCTGCGGTACTGTGGTCACCACAATCACTGCAGTGAAGAGTAAACCAGCTCGACCACTACTGCCTGGACTGAGCAAAAATCCCACCCAGCAGACCCCCTTGAAGCCTCCCAGCGGCACCAAGTCCAAGCTGTCGTCTCGGAGGGTGTCAGAGCAGCCATCCATGCTGGGGACGATGGGGAGTAAGGCCCTGTCCTCTTCCGACACAGAGCTGCTTATGCTCAATGGGTCCGATCCTGTGGCAGAGGCCGCCATCCGCCAGCTCCACGAGTCAGCCAAGCAGAAGCTCAAGTCCCCGGTCAAGAAGAGCACCATCATCATCTCAGGAGTGGCCAAGACCCCTCTTTCTCAGGATGATGAGATGGCATTGATGGTGGGCTACGCTGCTGCGATGGATGCCTCCATGTCGGAGCAGGGTTCTCAGGAGATTTCTCTGGCGACTGCTTCAGTAGTAGGAGCCAGTAGCAACCTCCCGGAGGCGTGGTCAGAACCCCAGGAGGGCCCCAGTGGAGTTGTCCAGGCTCAAGCCCAGCAGGCAAGCCAAGCAGAAGAGGACCCAGACAGAAATGCAGATAAAACCTCCATGTCCCTCTGCATCTCAGAGTCGGGCTCCAAAAAGAGCAGGGGAGGCGGCTTCCTGCAAAAGAGTGCCAAGCTGTTCTTCCGCCGGCGCCGCCAGTGCAAGGACCCGGGTATGAGCCAGTCGCACAACGACCTGGTGTACTTGGAGCAACCTGTGACGGTGGACCGAGAGAAACGCACAGCCACTTTCAGCCGGATGTTGAACCGCAAGCTGCTGCCCAAGAGCAAGAGCAAAGCCAACGGCTCCACAACCCAGACATCCACTCCCACCCTGGAGGAACAACACGCAGCCTGACTCTCCCTCCAATAGTTCTGGAGCCCCCTACGCCGCCACTCCTACCACCTCTAACCCCTTCTTTAGTCCTCCAGCCCCCCACGCCGCCACTCCTACCACCTCTAACCCCTTCTTTAGTCCTCCAGCCCCCCACGCCACCACTCCTACCACCTCTAACCCCTTCTTTAGTCCTCCAGCCCCCCACTCCACCACCCCGACCACCCGCTTCTTCCCCTCCTCTAGTCTTCCAGCCCCCCActcc

Function

NR:

description
C2 domain-containing protein 2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021618086.2 True 3234 mRNA 0.51 13 32462559 32485561

Neighbor

gene id symbol gene type direction distance location
LOC110533655 LOC106603528 coding downstream 15069 32432886 ~ 32447490 (-)
LOC110533654 LOC106603527 coding downstream 39679 32368686 ~ 32422880 (-)
LOC110533653 LOC106603526 coding downstream 105913 32353917 ~ 32356646 (-)
LOC110533652 LOC106603525 coding downstream 109357 32246991 ~ 32353202 (-)
LOC110533647 LOC106603522 coding downstream 1302049 31154471 ~ 31160510 (-)
LOC110533656 LOC106603531 coding upstream 2766 32488327 ~ 32496739 (-)
LOC110533661 LOC106603536 coding upstream 38865 32524426 ~ 32557392 (-)
LOC110533665 LOC106603540 coding upstream 390678 32876239 ~ 32911266 (-)
LOC110533666 LOC106603541 coding upstream 448170 32933731 ~ 32952352 (-)
LOC110533667 LOC106603542 coding upstream 475106 32960667 ~ 32967754 (-)
G879557 NA non-coding downstream 10442 32448953 ~ 32452117 (-)
G879515 NA non-coding downstream 44292 32388469 ~ 32418267 (-)
G879453 NA non-coding downstream 219312 32243021 ~ 32243247 (-)
G879371 NA non-coding downstream 348278 32106240 ~ 32114281 (-)
G879269 NA non-coding downstream 485997 31929936 ~ 31976562 (-)
G879580 NA non-coding upstream 36678 32522239 ~ 32522461 (-)
G879619 NA non-coding upstream 105904 32591465 ~ 32595689 (-)
G879622 NA non-coding upstream 116272 32601833 ~ 32602619 (-)
G879623 NA non-coding upstream 120090 32605651 ~ 32609567 (-)
G879615 LOC106603538 non-coding upstream 144786 32630347 ~ 32632526 (-)
G879440 LOC106603524 other downstream 236623 32225432 ~ 32225936 (-)
G878962 NA other downstream 1013396 31447482 ~ 31449163 (-)
LOC110533621 NA other downstream 2546054 29906094 ~ 29922728 (-)
G875194 NA other downstream 3477489 28941240 ~ 28985070 (-)
G879617 NA other upstream 100330 32585891 ~ 32588838 (-)
G879763 NA other upstream 304806 32790367 ~ 32790802 (-)
G880718 LOC106603546 other upstream 550602 33036163 ~ 33037883 (-)
LOC110533673 NA other upstream 668409 33153970 ~ 33251521 (-)
G880807 NA other upstream 677351 33162912 ~ 33165022 (-)

Expression


Co-expression Network