RNA id: XM_036990087.1


Basic Information

Item Value
RNA id XM_036990087.1
length 2754
RNA type mRNA
GC content 0.48
exon number 16
gene id LOC110533678
representative False

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 33494333 ~ 33545512 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGTTCCTGTTGTTCCTCACAACGATCACCATGGAGTTCAGTTAATGAAAAGCACCATGTTGAGTAACTGGAAAATGTAATAAATGTGTTCCCTGTTCAGTGTGGGATGCTAGCGGACCGGTGGCGAGCCGAGGCTGAAGGAGCATGGTGAAGCACCAACCCTTGCAGCAGGTCTATGAGAAGCAGCTGTGTTTGTCCTTCCTCACTGGGATCTATGGCTGCCGCTGGAAACGCTACCAGCGTTCCCATGACAACAGCTCCAAGTGGGAATGTGCATGGTTCATCATCTTGTGCAGCACCTTCTCCCTGCTCCTCTTCTGGGCTTACTTCTGGTTGGAGGCCCACAATGACTACAACCAATTCAACTGgtTACTATACAACCGTTCTGGGGAATGGAAGGACGGCACTGTCCCCATTCTTGCAACCACCGCAGTTGGCTTTAGTTACATAACATTTTTAATGGTTTTAGCACTCTGTCATATTTCACTGGGACAGCAGCTGAACCTCTACTGGATCCACAAGATTGGTGTGTTGGCTGCCTTGATCACCACTGTCAGTGGTGTGGTCTCCATCAGTGATGTGTGGGGGGACGAATGGGACATCATTCTTATATCGCTACAGTTCACAGGTCCTTTCCTGCACATAGGAGCTCTGGCTGCTGTCACAGCGCTGGGTTGGCTGGTCGCTGGACATGTGATCCGTGCAGGGAGAACCAAGTTCCACATGATTGTGTTGCTTGTCTACCTAAGTGTCCTGCTGGTCCTCTACATGGTTCCCCTTGCCATCACCTCACCCTGTATCATGGACAGGAACAGCCTCAAACCTCGACCTGATGTCATTGGAAGACGGGGGGCTCCAATGCTGGCTCCAGAGAACACCCTGATGTCCTTCAACAAGGCCCTGCAACAGGGGGTCAGCTCCCTGGAGGCCGACGTCTCCGTCAGTCTGGACGGGGTGCCCTTCCTGATGCGAGACCGCACCCTGAGAAGGACCACTAACATCGCCAAGGTCTTTCCAGACAAACAGCACGAGGACGCCTCTCTCTTCAATTGGACAGAGATTCGCTCTCTAAATGCGGGGCAGTGGTTTTTGGAGagcgACCCCTACTGGACGGTTGGGTCTCTGACAGGGAGGGAACGGAACCGAATGGGGAACCTGACAGTGTGTAGCCTGGTAGAGATGCTCCGCCTGACAGCCAGAGCCAACCGCTCAGCCCTGTTAAACCTCCAGAGACCTCCCCCAGAACACCCACACTACAAGACCTGGATCATGGACACCCTGTGGGCCGTCCAGAGGTCTGGGATATCACAGAAGAGGGTGACGTGGACTCCGGACACAGACAGGGGCCGTGTCAGGGGGCTGCAGCAGACCTCCTTAGAGAAACTGTCAggggaggaggtcagacacaGGGGCATCAGCAGCCTCACCCTGCGCTACTCACAGGCCAGTAACAAGGACATTCAGGACTTCCTGGTGAACAACATGAGTGTGATGGTGTACCCGGTGAATGAGCCGTGGCTCTATTCAGTGCTGTGGTGCAGCGGAGTGCCTTCTGTCTCCTCCGACGCCCCCCAGGTCCTCCGCAAGGTGCCCTACCCCATCTGGCTCATGAGCCCGTATGAATACTGCTTAGTCTGGATCACCTCAGATCTTGTCTCCATCGCCATAGTTACAGGAATATTCATCTTTCAAAAATGGAGGATGAGTGGCATGCAGAACTACAACCCAGAGCAGATCATGCTGAGTGCTGTGACACGCCGGCCCAGCCGAGACGTCAACATCATGAAGGAGAAACTCATATTCTCAGAGGTAAGCAATGGAGTAACCAATACAGATGAACATTTATATCCAGAGAATGGCTATGACATTGGGCAGTACAAGTGAGCTGTGTCTGTATACCTGGAGAATGGCCAGGACAATACACACTACAGATGAattgtctctgtacctgtttgaGCTGGTTGTGCTAACTACACTTATGACGGCATCACACGGAGACTGCAACAGACAGAATCACAATGGCTGCTACTTTAAACGTAGATGTTTCCGCCAACATGTTAGAACTTTGAACTTCTAAAAGTTGTGAATGTTCAATGTTTTGAAGACTGTTGATCTACTTGCTGGAGTGACCTTTTTAAAAGTTGTATTTCAAGCAGGATCATGGGATGTTTTTTCTTctcaactgtacattttttaaaaatatgacTGTTTTTCAATGATTTTCTTTTCCCTCTGAGAGGATTGTCATGGTTTGGTGTTCTAAATAGTATGCTATTATAAGACTGAATTCACTCTCATGAGGAGTAGTGTGTGTCCTCTCCTATCGATGTGTGAAGGACATTTAGCATCATTGGGAATGTACACTGTTCTTGCATTGTGGTTTTACAGGTATGAACATGAAGGGAATTCAATAGTCAACATAGTCCATGTTGCAATCATATTTTCTCTGCCTATTTTGTCATGCCATGATTGGTTTGCTTTAGGTTGAAGTTATTATATCCTTATCTCTTCACGTGGCTGCCTTTTTGTAAACTAGTTTCCTGCTATGTTACAAGAAGAGTCTGTTGCAGCGGCAGTGTGTTTCAGTACTTATATTGTTATATGACACAACTCCTATAAATAGTATTTCAGgaatagtaccagtcaaaagtttggacacacctacagtactcattccaggttttttctttatttttactattttctacattgtagaataatcaaaactattaaataacacatatggaatcatgta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1002239 lncRNA downstream 142 33492508 ~ 33494191 (-) True G880776
TU1002400 lncRNA downstream 29227 33464859 ~ 33465106 (-) True G880928
TU1002363 lncRNA downstream 76720 33417372 ~ 33417613 (-) True G880892
TU1002352 lncRNA downstream 130308 33363608 ~ 33364025 (-) True G880881
TU1002236 lncRNA downstream 150343 33341342 ~ 33343990 (-) True LOC110533676
TU1002246 lncRNA upstream 47767 33556464 ~ 33576080 (-) True LOC110533683
TU1002460 lncRNA upstream 81921 33590618 ~ 33593053 (-) True G880980
TU1002464 lncRNA upstream 90393 33599090 ~ 33602426 (-) True G880984
TU1002433 lncRNA upstream 107487 33616184 ~ 33621104 (-) False G880954
TU1002432 lncRNA upstream 108190 33616887 ~ 33621104 (-) True G880954
XM_021618119.2 mRNA downstream 95256 33341342 ~ 33399077 (-) False LOC110533676
XM_021618120.2 mRNA downstream 95256 33341342 ~ 33399077 (-) False LOC110533676
XM_021618111.2 mRNA downstream 176062 33257944 ~ 33318271 (-) False LOC110533674
XR_002475015.2 mRNA upstream 46736 33555433 ~ 33576409 (-) False LOC110533683
XR_002475014.2 mRNA upstream 46736 33555433 ~ 33576454 (-) False LOC110533683
XM_021618135.2 mRNA upstream 430738 33939435 ~ 33973289 (-) False LOC110533687
LOC110534889 mRNA upstream 676237 34184934 ~ 34185439 (-) True LOC110534889
LOC110534891 mRNA upstream 703890 34212587 ~ 34217566 (-) True LOC110534891
TU1002241 other downstream 242812 33153970 ~ 33251521 (-) False LOC110533673
TU1002275 other downstream 329311 33162912 ~ 33165022 (-) False G880807
TU1002179 other downstream 456450 33036163 ~ 33037883 (-) True G880718
TU1002175 other downstream 456665 33036163 ~ 33037668 (-) False G880718
TU1002177 other downstream 456665 33036163 ~ 33037668 (-) False G880718
TU1002474 other upstream 104628 33613325 ~ 33678839 (-) True G880994
TU1002673 other upstream 430375 33939072 ~ 33973240 (-) False LOC110533687
TU1002671 other upstream 430738 33939435 ~ 33973240 (-) False LOC110533687
TU1002672 other upstream 430738 33939435 ~ 33973312 (-) True LOC110533687
TU1003325 other upstream 904366 34413063 ~ 34417261 (-) True G881778

Expression Profile