RNA id: TU1002474


Basic Information

Item Value
RNA id TU1002474
length 2515
RNA type TUCP
GC content 0.40
exon number 2
gene id G880994
representative True

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 33613325 ~ 33678839 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TAAAAACATAACACTTTATTTTGTGTCAATTAATACTTTATATTATCATACACAGGTTCATAAAAATGAGAAAAGGCTCTGATCATGTAAAACAAAAAAGGTATGACCAAAACATGGATTTATGTGTGTGCAAGTATGCAGAGTACAGTATTCCCTTTCAAAATAACAATTCCTGCATACCTTTCCTCAACATGATAAAAATATCTTaataaaaaaatgtcaaataGATATTCCCTGAAAACTTAAATATTAGAAGTCAACAGGCACAAAAAATATCTGAAAGCAGTGTACATGTAATGTATTCAAAAGCTTTATTTCAGACAGGTGAATTTGATAAGCAACAGTGTGCGTCTTCATTGGCATCTCCATCAATTCTTCTGCAAGGAAattcaaaatgtataaaacatgttttaaagtaataatCTTAATTTTATTGGTCCTATATATGCTGCACTGATTGGTGACTCaatgatttacatttttttttaatgtaaaaaaataaaaataaatgtatatatcCTCTTTGCCTATCTTTTCTTACAATAATTCACTTTCTGTTATCATTGTCCTACTGTTAGTACCTACCTGCATTTGTTCATATATCCAGGGGAGGAAGTGGGTGACATTGCCATAGATTCCTGGTTTGTTCTTCAGGGCACAACCTATACCCCAGCTAGTGTCCCCTACCAGCCACCATACTGAACCCTCCTTGGCCACCATTGGTCCTCCACTGTCCCCCTGCAAGACACAAGAAGTTACCCGCTACCCCTCCTATGTTAGCATTACAAAATGGGACCATAACTTTAACATGGTGCATTTGGAATGTACAGTCAACttcatcagatttgccaccaatactccttataggacacatcactgcactctatactactctgtaaactggtcatctctgtataccagtcgcaagacccactggttgatgcttatttataaaaccctcttagcgCTCACTAACTGATAatcctactgcagccctcatcctccacatacaacaaccgttctgccagtcacattctgttaaaggtccccaaagcacacacattcctGGGTCACTCTtgttttcagttcactgcagctagcgactggaacgagctgcaaagaaacactcaaactggacagttttatctccatctcttcattcaaagactcaatcatggacactcttgcttacagttgtggctgctttgcgtgatgttgtctctaccttcctgcctttgtgctgttgtctgtgcccaatagtgtttgtaccatgttttgtgctgctaccatattgtgttgctaccatgttgttgttatgtggtgCTGCTACCAtactatgttgtcatgtgttgctgccattctTAGGTCtccctttatgtagtgttgtggtgtctctcttgtcgtgatgtgtgttatgtcctatatttttatttttaattctagcccccgtccccgcaggaggccttttggtaggccatcattgtatataaaaatgtgttcttaactgacttgccttgttgaataaaatgttaaataaataaatacaaaataaaacaaaagtattcagaccacttcactttttccacattttgttactttacagccttattctaaaatgtataaaaaatgcaaaacatcctcatcaatctacacacaataccccataatggcaaagcgaaaacaggtttttagaaacagAAACCTTATTTGCATAACTATTATTTACATATGACCCTTTAATATGAGactcctgtttcctgtttccattgatcatccttgagatgtttgtacaacttgattggagtctgtggtaaattcaattgatttgacatgatttcaaaaggcaaacacctgtctttataaggtcccacagttgacagtgcatgtcagagcaaaaaccaagccatgaggtcgaaggaattgtccgtagagctccgtgacaggattgtgtcgaggcacagatctggtgaaggatACCTAAACAtttcagcaacattgaaggtccccaagaacacagtggcctccatcattcttaaatggaagaagactcttccgagagctgaccaagaacccgatggtcactctgacagagctccagagtacctctgtggagattggaaaaccttccagaaggacaaccatctctgcagcactccaccaaatcaggctttcatggtagagtggccagacggaagtccctcctcaggaaaaggcacatgacagcctgcttggagtttgccaaaaaagcacctaaaggacctaaaggcctgaatgccaagtgtcacgcctggaggaaacctgacatcatatgtactgtgaagcatggtggtggcagcatcctgctgtggggatgtttttcagcagtagggactgggagactagtcaggatcgagggaaagatgaatggagcaaagtacagagagatccttgatgaaaacctgatccagaatgctcaggaactcagactggggcgacggttccccttccaacaggacaacgatcctaagcacacagc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1002464 lncRNA downstream 10899 33599090 ~ 33602426 (-) True G880984
TU1002460 lncRNA downstream 20272 33590618 ~ 33593053 (-) True G880980
TU1002246 lncRNA downstream 37245 33556464 ~ 33576080 (-) True LOC110533683
TU1002406 lncRNA downstream 61083 33471839 ~ 33552242 (-) True G880933
TU1002239 lncRNA downstream 119134 33492508 ~ 33494191 (-) True G880776
TU1002576 lncRNA upstream 79723 33758562 ~ 33759801 (-) True G881090
TU1002680 lncRNA upstream 215781 33894620 ~ 33895120 (-) True G881183
TU1002746 lncRNA upstream 305771 33984610 ~ 33984880 (-) True G881242
TU1002747 lncRNA upstream 306682 33985521 ~ 33985778 (-) True G881243
TU1002754 lncRNA upstream 312719 33991558 ~ 33991770 (-) True G881250
XR_002475014.2 mRNA downstream 36871 33555433 ~ 33576454 (-) False LOC110533683
XR_002475015.2 mRNA downstream 36916 33555433 ~ 33576409 (-) False LOC110533683
XM_036990086.1 mRNA downstream 67813 33494333 ~ 33545512 (-) True LOC110533678
XM_021618127.2 mRNA downstream 68150 33494333 ~ 33545175 (-) False LOC110533678
XM_036990087.1 mRNA downstream 104628 33494333 ~ 33508697 (-) False LOC110533678
XM_021618135.2 mRNA upstream 260596 33939435 ~ 33973289 (-) False LOC110533687
LOC110534889 mRNA upstream 506095 34184934 ~ 34185439 (-) True LOC110534889
LOC110534891 mRNA upstream 533748 34212587 ~ 34217566 (-) True LOC110534891
XM_021619831.2 mRNA upstream 546109 34224948 ~ 34225889 (-) True LOC110534914
XM_036989343.1 mRNA upstream 554297 34233136 ~ 34234195 (-) True LOC110534892
TU1002241 other downstream 361804 33153970 ~ 33251521 (-) False LOC110533673
TU1002275 other downstream 448303 33162912 ~ 33165022 (-) False G880807
TU1002179 other downstream 575442 33036163 ~ 33037883 (-) True G880718
TU1002175 other downstream 575657 33036163 ~ 33037668 (-) False G880718
TU1002177 other downstream 575657 33036163 ~ 33037668 (-) False G880718
TU1002673 other upstream 260233 33939072 ~ 33973240 (-) False LOC110533687
TU1002671 other upstream 260596 33939435 ~ 33973240 (-) False LOC110533687
TU1002672 other upstream 260596 33939435 ~ 33973312 (-) True LOC110533687
TU1003325 other upstream 734224 34413063 ~ 34417261 (-) True G881778
TU1003400 other upstream 913483 34592322 ~ 34596182 (-) True LOC110533714

Expression Profile