RNA id: TCONS_00005680


Basic Information

Item Value
RNA id TCONS_00005680
length 316
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id XLOC_001913
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 8646959 ~ 8650855 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGCGTAAATGTATTTTACAAAGACCATgttaaacttattaaaatatttaaactgttttattaacAGATCAGCGCTCTGACAACTATAAGTGGATTTACTACAACTTCAGTTTCTATTATACTTCATCTAAGAAGAAGAGCTGGGAGGACAGCAGACAAGACTGTCAACAGCGAAGAGCAGATCTGCTGACCATAAAgagcccaaaagaaaatGTTCAAAAGTTTTCAGTCTTCGACACATCGTTACTGTGCTCTGATGAGTTCATCAGGTTGGAAAACTGCTTCATGTACTGATTCAAACTGCTGGATCTGCAAG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00003761 lncRNA upstream 238084 8402096 ~ 8408875 (+) True XLOC_001907
TCONS_00003758 lncRNA upstream 383635 8252143 ~ 8263324 (+) True XLOC_001905
TCONS_00005827 lncRNA upstream 609070 8036184 ~ 8037889 (+) True XLOC_001902
TCONS_00005679 lncRNA upstream 654500 7988025 ~ 7992459 (+) True XLOC_001901
TCONS_00005826 lncRNA upstream 662377 7978517 ~ 7984582 (+) True XLOC_001900
TCONS_00005828 lncRNA downstream 58630 8709485 ~ 8715748 (+) True XLOC_001917
TCONS_00005681 lncRNA downstream 122581 8773436 ~ 8773659 (+) True XLOC_001919
TCONS_00005829 lncRNA downstream 471538 9122393 ~ 9125863 (+) True XLOC_001926
TCONS_00005830 lncRNA downstream 995648 9646503 ~ 9661896 (+) False XLOC_001935
TCONS_00005682 lncRNA downstream 998517 9649372 ~ 9661381 (+) False XLOC_001935
TCONS_00003770 mRNA upstream 15598 8629275 ~ 8631361 (+) True XLOC_001912
TCONS_00003765 mRNA upstream 70741 8534750 ~ 8576218 (+) False XLOC_001911
TCONS_00003766 mRNA upstream 70741 8537825 ~ 8576218 (+) False XLOC_001911
TCONS_00003767 mRNA upstream 70741 8550435 ~ 8576218 (+) False XLOC_001911
TCONS_00003768 mRNA upstream 70741 8551897 ~ 8576218 (+) False XLOC_001911
TCONS_00003771 mRNA downstream 5562 8656417 ~ 8657684 (+) True XLOC_001914
TCONS_00003772 mRNA downstream 29875 8680730 ~ 8687894 (+) True XLOC_001915
TCONS_00003773 mRNA downstream 37823 8688678 ~ 8697787 (+) False XLOC_001916
TCONS_00003774 mRNA downstream 40081 8690936 ~ 8697780 (+) True XLOC_001916
TCONS_00003775 mRNA downstream 80133 8730988 ~ 8841038 (+) False XLOC_001918
TCONS_00003759 other upstream 303654 8343188 ~ 8343305 (+) True XLOC_001906
TCONS_00003739 other upstream 1068908 7573316 ~ 7578051 (+) True XLOC_001890
TCONS_00003731 other upstream 1436851 7083771 ~ 7210108 (+) False XLOC_001887
TCONS_00003693 other upstream 2877347 5744923 ~ 5769612 (+) False XLOC_001866
TCONS_00003679 other upstream 3494558 5151349 ~ 5152401 (+) True XLOC_001855
TCONS_00003778 other downstream 211666 8862521 ~ 8868895 (+) True XLOC_001921
TCONS_00003779 other downstream 218613 8869468 ~ 8880126 (+) False XLOC_001922
TCONS_00003791 other downstream 695541 9346396 ~ 9348506 (+) False XLOC_001931
TCONS_00003802 other downstream 1074919 9725774 ~ 9725891 (+) True XLOC_001937
TCONS_00003803 other downstream 1262208 9913063 ~ 9913177 (+) True XLOC_001940

Expression Profile

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